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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS29165 and AZOBR_RS29175 are separated by 2959 nucleotides
AZOBR_RS29175 and AZOBR_RS29180 are separated by 344 nucleotides
AZOBR_RS29180 and AZOBR_RS29185 are separated by 63 nucleotides
AZOBR_RS29185 and AZOBR_RS29190 are separated by 86 nucleotides
AZOBR_RS29165: AZOBR_RS29165 - hypothetical protein, at 667,811 to 668,326
_RS29165
AZOBR_RS29175: AZOBR_RS29175 - IclR family transcriptional regulator, at 671,286 to 672,074
_RS29175
AZOBR_RS29180: AZOBR_RS29180 - CoA-transferase, at 672,419 to 673,660
_RS29180
AZOBR_RS29185: AZOBR_RS29185 - aldehyde dehydrogenase, at 673,724 to 675,160
_RS29185
AZOBR_RS29190: AZOBR_RS29190 - hydroxyacid dehydrogenase, at 675,247 to 676,149
_RS29190
Group
Condition
AZOBR
_RS29165
AZOBR
_RS29175
AZOBR
_RS29180
AZOBR
_RS29185
AZOBR
_RS29190
stress
Paraquat dichloride 0.04 mg/ml
-0.3
-0.1
+0.2
+0.0
-3.5
carbon source
a-Ketoglutaric (C)
+0.2
-1.4
+0.0
+0.1
-2.2
carbon source
butyrate (C)
-0.1
-1.9
-0.2
+0.2
-1.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.1
-0.6
-0.4
-0.2
-1.7
nitrogen source
D-Alanine (N)
-0.2
-0.7
+0.3
+0.2
-2.4
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
+0.0
-1.1
-0.2
-0.3
-1.1
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-0.2
-0.8
-0.4
-0.1
-0.8
stress
D-Cycloserine 0.125 mg/ml
-0.6
+0.2
+0.5
-0.2
-2.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.1
-0.5
+0.0
-0.1
-1.8
stress
2-pentyl-furan 1.780666667 mM
+0.5
-0.6
+0.0
-0.2
-1.9
carbon source
L-Glutamine (C)
-0.0
-1.3
+0.1
+0.2
-1.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.0
+0.6
-0.6
-1.3
stress
2-pentyl-furan 1.335528 mM
-0.1
-0.8
+0.1
-1.2
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
-0.2
-0.7
+0.3
-1.0
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.3
+0.2
-0.4
-1.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
+0.3
-0.9
-0.1
+0.2
-0.9
nitrogen source
L-Glutamic (N)
-0.6
-1.3
-0.6
+0.8
+0.3
carbon source
Ethanol (C)
-0.1
-1.2
-0.1
-0.2
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.5
+0.6
+0.2
-1.3
motility
inner cut, LB soft agar motility assay
-0.2
+0.7
-0.5
+0.4
-1.3
lb
LB
+0.1
+0.5
-0.2
+0.0
-1.3
carbon source
L-Proline (C)
-0.3
-1.2
+0.3
+0.1
+0.4
nitrogen source
L-Threonine (N)
-0.1
-0.7
+0.0
-0.6
+1.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
+0.5
-0.1
+0.6
-1.4
motility
inner cut, LB soft agar motility assay
+0.4
+0.8
-0.1
+0.6
-1.9
stress
3-octanone 5.2896 mM
-0.2
-1.1
+0.0
+0.1
+1.0
stress
3-octanone 6.3476 mM
-0.1
-0.6
-0.2
-0.6
+1.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
-0.1
+0.5
-0.2
-1.2
stress
2-pentyl-furan 1.780666667 mM
+0.1
-0.7
+0.1
+0.4
+0.9
carbon source
pyruvate (C)
+0.1
-0.4
-0.1
+0.2
+1.5
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