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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS29140 and AZOBR_RS29145 are separated by 68 nucleotides
AZOBR_RS29145 and AZOBR_RS29150 are separated by 51 nucleotides
AZOBR_RS29150 and AZOBR_RS29155 are separated by 239 nucleotides
AZOBR_RS29155 and AZOBR_RS29160 are separated by 149 nucleotides
AZOBR_RS29140: AZOBR_RS29140 - hypothetical protein; putative signal peptide, at 661,547 to 661,732
_RS29140
AZOBR_RS29145: AZOBR_RS29145 - peptidase, at 661,801 to 662,877
_RS29145
AZOBR_RS29150: AZOBR_RS29150 - TonB-denpendent receptor, at 662,929 to 665,322
_RS29150
AZOBR_RS29155: AZOBR_RS29155 - hypothetical protein, at 665,562 to 666,539
_RS29155
AZOBR_RS29160: AZOBR_RS29160 - putative RNA polymerase sigma-70 factor ECF subfamily, at 666,689 to 667,213
_RS29160
Group
Condition
AZOBR
_RS29140
AZOBR
_RS29145
AZOBR
_RS29150
AZOBR
_RS29155
AZOBR
_RS29160
stress
3-octanone 6.3476 mM
N.D.
-0.9
+0.2
-2.5
-0.6
stress
3-octanone 6.3476 mM
N.D.
-0.2
+0.1
-2.0
-0.5
stress
3-octanone 5.2896 mM
N.D.
-0.0
-0.0
-1.8
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
N.D.
+0.1
-0.1
-1.4
-0.4
stress
3-octanone 6.3476 mM
N.D.
-0.4
+0.0
-1.5
-0.1
stress
2-pentyl-furan 2.671 mM
N.D.
+0.3
-0.1
-2.1
+0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
+0.0
-0.1
-1.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.7
-0.2
-0.5
-0.0
stress
2-pentyl-furan 1.780666667 mM
N.D.
+0.5
-0.0
-1.1
-0.7
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
N.D.
-0.1
-0.1
-0.6
-0.4
stress
3-octanone 4.2317 mM
N.D.
+0.1
-0.1
-1.0
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
N.D.
-0.2
-0.2
-0.7
-0.2
stress
3-octanone 6.3476 mM
N.D.
+0.2
-0.2
-1.0
-0.1
stress
Sisomicin 0.01 mg/ml
N.D.
-0.4
+0.2
-0.6
-0.2
stress
3-octanone 5.2896 mM
N.D.
+0.2
-0.0
-1.1
-0.0
nitrogen source
L-Isoleucine (N)
N.D.
-0.5
-0.1
-0.6
+0.3
stress
3-octanone 5.2896 mM
N.D.
+0.1
+0.1
-0.7
-0.3
stress
2-pentyl-furan 1.335528 mM
N.D.
+0.4
-0.2
-1.1
+0.1
stress
2-pentyl-furan 1.780666667 mM
N.D.
+0.3
+0.1
-1.0
-0.1
stress
Paraquat dichloride 0.04 mg/ml
N.D.
+0.3
-0.2
-0.2
-0.6
nitrogen source
L-Serine (N)
N.D.
-0.5
-0.0
-0.4
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
N.D.
+0.3
+0.0
-0.8
-0.2
stress
3-octanone 5.2896 mM
N.D.
+0.3
+0.0
-0.8
-0.0
dmso control
DMSO control
N.D.
+0.4
+0.0
-0.7
-0.1
stress
Cobalt chloride 0.3 mM
N.D.
+0.2
+0.2
-0.4
-0.3
motility
inner cut, LB soft agar motility assay
N.D.
+0.7
-0.1
-0.8
+0.1
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
N.D.
-0.4
+0.1
+0.4
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.3
-0.3
+0.4
+0.7
motility
outer cut, LB soft agar motility assay
N.D.
+0.8
-0.1
-0.4
+0.2
stress
2-pentyl-furan 1.335528 mM
N.D.
+0.5
+0.2
-0.7
+0.5
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