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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS29130 and AZOBR_RS29140 are separated by 635 nucleotides
AZOBR_RS29140 and AZOBR_RS29145 are separated by 68 nucleotides
AZOBR_RS29145 and AZOBR_RS29150 are separated by 51 nucleotides
AZOBR_RS29150 and AZOBR_RS29155 are separated by 239 nucleotides
AZOBR_RS29130: AZOBR_RS29130 - multidrug ABC transporter ATPase, at 659,103 to 660,911
_RS29130
AZOBR_RS29140: AZOBR_RS29140 - hypothetical protein; putative signal peptide, at 661,547 to 661,732
_RS29140
AZOBR_RS29145: AZOBR_RS29145 - peptidase, at 661,801 to 662,877
_RS29145
AZOBR_RS29150: AZOBR_RS29150 - TonB-denpendent receptor, at 662,929 to 665,322
_RS29150
AZOBR_RS29155: AZOBR_RS29155 - hypothetical protein, at 665,562 to 666,539
_RS29155
Group
Condition
AZOBR
_RS29130
AZOBR
_RS29140
AZOBR
_RS29145
AZOBR
_RS29150
AZOBR
_RS29155
stress
3-octanone 6.3476 mM
+0.3
N.D.
-0.9
+0.2
-2.5
stress
3-octanone 6.3476 mM
+0.2
N.D.
-0.2
+0.1
-2.0
stress
2-pentyl-furan 2.671 mM
-0.0
N.D.
+0.3
-0.1
-2.1
stress
3-octanone 5.2896 mM
+0.0
N.D.
-0.0
-0.0
-1.8
stress
3-octanone 6.3476 mM
+0.1
N.D.
-0.4
+0.0
-1.5
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
-0.1
N.D.
+0.1
-0.1
-1.4
stress
Cobalt chloride 0.3 mM
-1.6
N.D.
+0.2
+0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
N.D.
-0.7
-0.2
-0.5
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.2
N.D.
+0.0
-0.1
-1.1
stress
3-octanone 4.2317 mM
-0.2
N.D.
+0.1
-0.1
-1.0
stress
3-octanone 6.3476 mM
-0.1
N.D.
+0.2
-0.2
-1.0
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.3
N.D.
+0.1
-0.1
-0.7
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
+0.1
N.D.
-0.2
-0.2
-0.7
stress
2-pentyl-furan 1.335528 mM
-0.0
N.D.
+0.4
-0.2
-1.1
nitrogen source
L-Isoleucine (N)
+0.3
N.D.
-0.5
-0.1
-0.6
stress
3-octanone 5.2896 mM
+0.1
N.D.
+0.2
-0.0
-1.1
stress
1-octen-3-ol 0.7753276667 mM
+0.1
N.D.
-0.2
+0.0
-0.7
stress
2-pentyl-furan 1.780666667 mM
-0.2
N.D.
+0.3
+0.1
-1.0
stress
2-pentyl-furan 1.780666667 mM
-0.2
N.D.
+0.5
-0.0
-1.1
nitrogen source
L-Serine (N)
+0.2
N.D.
-0.5
-0.0
-0.4
stress
Sisomicin 0.01 mg/ml
+0.2
N.D.
-0.4
+0.2
-0.6
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
-0.0
N.D.
+0.3
+0.0
-0.8
stress
3-octanone 5.2896 mM
+0.1
N.D.
+0.3
+0.0
-0.8
stress
Benzethonium chloride 0.003 mM
+0.4
N.D.
+0.0
-0.3
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
N.D.
-0.3
-0.3
+0.4
stress
2-pentyl-furan 1.335528 mM
-0.2
N.D.
+0.5
+0.2
-0.7
dmso control
DMSO control
+0.0
N.D.
+0.4
+0.0
-0.7
motility
outer cut, LB soft agar motility assay
-0.1
N.D.
+0.8
-0.1
-0.4
stress
Paraquat dichloride 0.04 mg/ml
+0.3
N.D.
+0.3
-0.2
-0.2
motility
inner cut, LB soft agar motility assay
+0.3
N.D.
+0.7
-0.1
-0.8
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