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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS28330 and AZOBR_RS28335 are separated by 202 nucleotides
AZOBR_RS28335 and AZOBR_RS28340 are separated by 44 nucleotides
AZOBR_RS28340 and AZOBR_RS28345 are separated by 834 nucleotides
AZOBR_RS28345 and AZOBR_RS28350 are separated by 8 nucleotides
AZOBR_RS28330: AZOBR_RS28330 - potassium channel protein, at 527,434 to 528,516
_RS28330
AZOBR_RS28335: AZOBR_RS28335 - hypothetical protein, at 528,719 to 530,371
_RS28335
AZOBR_RS28340: AZOBR_RS28340 - beta-xylosidase, at 530,416 to 531,342
_RS28340
AZOBR_RS28345: AZOBR_RS28345 - phosphoglycerate mutase, at 532,177 to 532,773
_RS28345
AZOBR_RS28350: AZOBR_RS28350 - inositol-3-phosphate synthase, at 532,782 to 533,885
_RS28350
Group
Condition
AZOBR
_RS28330
AZOBR
_RS28335
AZOBR
_RS28340
AZOBR
_RS28345
AZOBR
_RS28350
stress
2-pentyl-furan 1.335528 mM
-1.5
-0.4
-0.4
N.D.
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-0.1
-0.5
N.D.
-0.3
stress
2-pentyl-furan 1.780666667 mM
-0.2
-0.3
-0.4
N.D.
-0.1
stress
D-Cycloserine 0.125 mg/ml
-0.6
-0.0
-0.3
N.D.
-0.1
nitrogen source
L-Isoleucine (N)
-1.0
+0.1
+0.1
N.D.
-0.2
stress
Sisomicin 0.01 mg/ml
-0.2
+0.0
-0.2
N.D.
-0.6
stress
1-octen-3-ol 0.7753276667 mM
-0.7
-0.1
+0.1
N.D.
-0.2
stress
2-pentyl-furan 2.671 mM
+0.3
-0.3
-0.3
N.D.
-0.6
stress
1-octen-3-ol 0.6030326667 mM
-0.6
-0.3
+0.0
N.D.
+0.1
stress
2-pentyl-furan 1.335528 mM
-0.3
+0.0
-0.5
N.D.
+0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.6
-0.1
+0.2
N.D.
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.4
-0.5
N.D.
-0.1
lb no stress control
LB no stress control
-0.8
+0.0
+0.2
N.D.
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.2
-0.2
N.D.
-0.5
carbon source
D-Gluconic Acid (C)
+0.2
+0.3
-0.4
N.D.
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.1
-0.4
N.D.
-0.3
stress
2-pentyl-furan 1.335528 mM
-0.5
-0.2
+0.2
N.D.
+0.3
lb
LB
+0.3
-0.2
-0.6
N.D.
+0.2
lb
LB
-0.5
+0.2
+0.3
N.D.
-0.0
stress
2-pentyl-furan 1.780666667 mM
+0.2
-0.3
+0.6
N.D.
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
+0.3
-0.2
+0.3
N.D.
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.3
+0.8
N.D.
-0.7
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
-0.3
+0.0
+0.6
N.D.
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
-0.3
+0.1
N.D.
-0.1
motility
inner cut, LB soft agar motility assay
-0.6
+0.4
+0.4
N.D.
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.1
-0.3
N.D.
-0.0
nitrogen source
L-Glutamic (N)
+0.3
+0.3
-0.4
N.D.
+0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.7
-0.2
+0.1
N.D.
-0.1
stress
2-pentyl-furan 1.335528 mM
+0.4
-0.1
+0.5
N.D.
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.1
-0.3
+0.2
N.D.
-0.2
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