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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS26950 and AZOBR_RS26955 are separated by 30 nucleotides
AZOBR_RS26955 and AZOBR_RS26960 are separated by 260 nucleotides
AZOBR_RS26960 and AZOBR_RS26965 are separated by 523 nucleotides
AZOBR_RS26965 and AZOBR_RS26970 are separated by 92 nucleotides
AZOBR_RS26950: AZOBR_RS26950 - membrane protein, at 192,967 to 193,626
_RS26950
AZOBR_RS26955: AZOBR_RS26955 - two-component response regulator, at 193,657 to 194,043
_RS26955
AZOBR_RS26960: AZOBR_RS26960 - hypothetical protein, at 194,304 to 196,016
_RS26960
AZOBR_RS26965: AZOBR_RS26965 - 30S ribosomal protein S21, at 196,540 to 196,743
_RS26965
AZOBR_RS26970: AZOBR_RS26970 - translation initiation factor IF-3, at 196,836 to 197,369
_RS26970
Group
Condition
AZOBR
_RS26950
AZOBR
_RS26955
AZOBR
_RS26960
AZOBR
_RS26965
AZOBR
_RS26970
stress
2-pentyl-furan 2.671 mM
-0.8
N.D.
-0.5
N.D.
N.D.
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-1.0
N.D.
-0.3
N.D.
N.D.
stress
2-pentyl-furan 1.335528 mM
-0.9
N.D.
-0.2
N.D.
N.D.
stress
Cobalt chloride 0.3 mM
-1.0
N.D.
+0.0
N.D.
N.D.
motility
inner cut, LB soft agar motility assay
-1.0
N.D.
+0.0
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.9
N.D.
+0.0
N.D.
N.D.
stress
Paraquat dichloride 0.02 mg/ml
-0.7
N.D.
-0.2
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.9
N.D.
+0.1
N.D.
N.D.
stress
2-pentyl-furan 1.780666667 mM
-0.7
N.D.
-0.0
N.D.
N.D.
stress
3-octanone 4.2317 mM
-0.4
N.D.
-0.3
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.5
N.D.
-0.1
N.D.
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.7
N.D.
+0.1
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-0.7
N.D.
+0.2
N.D.
N.D.
anaerobic; rich media
LB; anaerobic
-0.6
N.D.
+0.1
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.6
N.D.
+0.2
N.D.
N.D.
motility
inner cut, LB soft agar motility assay
-0.6
N.D.
+0.1
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.5
N.D.
+0.1
N.D.
N.D.
stress
3-octanone 5.2896 mM
-0.5
N.D.
+0.1
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
N.D.
+0.2
N.D.
N.D.
stress
benzoic 0.29 mg/ml
-0.4
N.D.
+0.2
N.D.
N.D.
lb
LB
-0.5
N.D.
+0.3
N.D.
N.D.
stress
copper (II) chloride 2 mM
-0.4
N.D.
+0.2
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
N.D.
-0.4
N.D.
N.D.
nitrogen source
L-Aspartic Acid (N)
+0.4
N.D.
-0.3
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
N.D.
-0.1
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
N.D.
+0.2
N.D.
N.D.
carbon source
succinate (C)
+0.7
N.D.
-0.0
N.D.
N.D.
stress
3-octanone 6.3476 mM
+0.8
N.D.
-0.1
N.D.
N.D.
nitrogen source
L-Glutamic (N)
+0.6
N.D.
+0.2
N.D.
N.D.
stress
2-pentyl-furan 1.335528 mM
+0.5
N.D.
+0.4
N.D.
N.D.
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