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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS26660 and AZOBR_RS26665 are separated by 40 nucleotides
AZOBR_RS26665 and AZOBR_RS26670 are separated by 192 nucleotides
AZOBR_RS26670 and AZOBR_RS26675 are separated by 5 nucleotides
AZOBR_RS26675 and AZOBR_RS26680 are separated by 85 nucleotides
AZOBR_RS26660: AZOBR_RS26660 - signal peptidase II, at 129,467 to 129,997
_RS26660
AZOBR_RS26665: AZOBR_RS26665 - conserved hypothetical protein; putative signal peptide; twin-arginine translocation signal domain protein, at 130,038 to 130,688
_RS26665
AZOBR_RS26670: AZOBR_RS26670 - zinc transporter ZitB, at 130,881 to 131,759
_RS26670
AZOBR_RS26675: AZOBR_RS26675 - IclR family transcriptional regulator, at 131,765 to 132,649
_RS26675
AZOBR_RS26680: AZOBR_RS26680 - ABC transporter permease, at 132,735 to 133,655
_RS26680
Group
Condition
AZOBR
_RS26660
AZOBR
_RS26665
AZOBR
_RS26670
AZOBR
_RS26675
AZOBR
_RS26680
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-2.5
-4.4
-4.4
-0.5
-0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-3.7
-2.4
-4.7
-0.7
-0.0
stress
Cobalt chloride 0.2 mM
-5.2
-3.0
-2.0
-0.5
-0.1
stress
Cobalt chloride 0.3 mM
-1.7
-2.3
-3.1
-0.5
-0.0
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-1.5
-3.1
+0.2
-1.3
+0.5
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-4.9
+0.7
+0.3
-1.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-4.8
-0.9
+0.5
+0.4
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-3.1
+0.2
-0.1
-1.2
+0.3
stress
3-octanone 6.3476 mM
-2.0
-1.7
-0.2
+0.1
+0.2
stress
Chlorite 1 mM
-0.4
-1.1
-0.4
-1.0
-0.4
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-1.9
+0.8
+0.1
-1.6
-0.2
stress
copper (II) chloride 2 mM
-1.0
-0.1
-1.2
-0.0
-0.2
lb no stress control
LB no stress control
-0.7
-0.8
-0.6
-0.0
-0.3
stress
Paraquat dichloride 0.02 mg/ml
+0.2
-1.6
-0.2
-0.0
-0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.3
-0.5
+0.3
-2.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.6
-0.4
-0.1
+0.0
+0.6
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.3
+0.7
-0.1
-2.3
+0.1
stress
Sisomicin 0.01 mg/ml
+0.4
+0.2
+0.1
-1.5
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-1.5
+0.5
+0.7
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.4
-0.7
+0.6
-0.6
lb
LB
+0.5
+0.8
-0.6
-1.2
-0.3
anaerobic; rich media
LB; anaerobic
+0.8
-0.2
+0.1
-1.0
-0.2
lb
LB
-0.2
+1.1
-0.2
-1.1
-0.1
stress
Paraquat dichloride 0.04 mg/ml
+0.4
+0.6
-0.0
-1.3
+0.1
motility
inner cut, LB soft agar motility assay
+1.1
-2.0
+0.2
+0.1
+0.3
nitrogen source
L-Glutamic (N)
-1.2
+1.2
+0.1
-0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.1
-0.4
+0.5
+0.6
+0.3
stress
Benzethonium chloride 0.003 mM
+1.4
+0.0
+0.2
-1.0
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.2
+1.4
-0.1
+0.2
-0.8
stress
3-octanone 6.3476 mM
+1.5
+1.1
-0.4
-0.0
+0.3
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