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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS26385 and AZOBR_RS26390 are separated by 44 nucleotides
AZOBR_RS26390 and AZOBR_RS26395 are separated by 90 nucleotides
AZOBR_RS26395 and AZOBR_RS26400 are separated by 35 nucleotides
AZOBR_RS26400 and AZOBR_RS26405 are separated by 81 nucleotides
AZOBR_RS26385: AZOBR_RS26385 - transcriptional regulator, at 66,163 to 67,272
_RS26385
AZOBR_RS26390: AZOBR_RS26390 - deacylase, at 67,317 to 68,363
_RS26390
AZOBR_RS26395: AZOBR_RS26395 - endoribonuclease, at 68,454 to 68,798
_RS26395
AZOBR_RS26400: AZOBR_RS26400 - ABC transporter substrate-binding protein, at 68,834 to 69,637
_RS26400
AZOBR_RS26405: AZOBR_RS26405 - amino acid ABC transporter ATP-binding protein, at 69,719 to 70,447
_RS26405
Group
Condition
AZOBR
_RS26385
AZOBR
_RS26390
AZOBR
_RS26395
AZOBR
_RS26400
AZOBR
_RS26405
stress
3-octanone 6.3476 mM
N.D.
-1.0
-1.3
-0.1
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
N.D.
+0.4
-1.7
-0.5
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.2
-1.3
-0.2
N.D.
stress
2-pentyl-furan 1.335528 mM
N.D.
-0.1
-1.2
-0.0
N.D.
stress
Benzethonium chloride 0.003 mM
N.D.
-0.1
-0.6
-0.6
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
N.D.
+0.1
-1.0
-0.4
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.4
-1.1
+0.4
N.D.
motility
inner cut, LB soft agar motility assay
N.D.
+0.1
-1.4
+0.3
N.D.
nitrogen source
L-Isoleucine (N)
N.D.
+0.4
-1.2
-0.0
N.D.
stress
1-octen-3-ol 0.7753276667 mM
N.D.
+0.3
-1.1
+0.0
N.D.
stress
benzoic 0.145 mg/ml
N.D.
-0.8
+0.4
-0.3
N.D.
stress
2-pentyl-furan 1.780666667 mM
N.D.
-0.7
+0.4
-0.4
N.D.
stress
Paraquat dichloride 0.04 mg/ml
N.D.
+0.3
-1.1
+0.1
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
N.D.
+0.4
-0.9
-0.1
N.D.
stress
3-octanone 6.3476 mM
N.D.
+0.9
-1.4
+0.0
N.D.
nitrogen source
L-Glutamic (N)
N.D.
+0.4
-0.5
-0.3
N.D.
nitrogen source
L-Threonine (N)
N.D.
+0.6
-1.0
+0.0
N.D.
stress
1-octen-3-ol 0.7753276667 mM
N.D.
+0.7
-0.7
-0.4
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
+0.4
-0.9
+0.4
N.D.
stress
1-octen-3-ol 0.6030326667 mM
N.D.
+0.8
-0.0
-0.5
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.6
+0.8
+0.1
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
-0.6
+0.4
+0.5
N.D.
lb
LB
N.D.
-0.2
+0.9
-0.2
N.D.
motility
inner cut, LB soft agar motility assay
N.D.
-0.5
+0.8
+0.2
N.D.
stress
Chlorite 1 mM
N.D.
+0.3
+0.9
-0.3
N.D.
stress
2-pentyl-furan 1.335528 mM
N.D.
+1.3
+0.0
-0.4
N.D.
stress
2-pentyl-furan 1.335528 mM
N.D.
-0.1
+0.9
+0.5
N.D.
nitrogen source
casaminos (N)
N.D.
+0.4
+0.8
+0.1
N.D.
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
N.D.
+0.7
+0.2
+0.5
N.D.
motility
outer cut, LB soft agar motility assay
N.D.
+0.4
+1.5
+0.0
N.D.
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