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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS26370 and AZOBR_RS26375 are separated by 42 nucleotides
AZOBR_RS26375 and AZOBR_RS26380 are separated by 244 nucleotides
AZOBR_RS26380 and AZOBR_RS26385 are separated by 258 nucleotides
AZOBR_RS26385 and AZOBR_RS26390 are separated by 44 nucleotides
AZOBR_RS26370: AZOBR_RS26370 - alpha/beta hydrolase, at 63,264 to 64,028
_RS26370
AZOBR_RS26375: AZOBR_RS26375 - hypothetical protein, at 64,071 to 64,952
_RS26375
AZOBR_RS26380: AZOBR_RS26380 - GntR family transcriptional regulator, at 65,197 to 65,904
_RS26380
AZOBR_RS26385: AZOBR_RS26385 - transcriptional regulator, at 66,163 to 67,272
_RS26385
AZOBR_RS26390: AZOBR_RS26390 - deacylase, at 67,317 to 68,363
_RS26390
Group
Condition
AZOBR
_RS26370
AZOBR
_RS26375
AZOBR
_RS26380
AZOBR
_RS26385
AZOBR
_RS26390
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.2
+0.0
-8.3
N.D.
+0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.7
+0.4
-8.3
N.D.
+0.4
stress
nitrite 10 mM
+0.0
-0.3
-4.9
N.D.
-0.5
stress
Benzethonium chloride 0.003 mM
-0.5
-0.1
-4.8
N.D.
-0.1
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.0
-0.5
-4.6
N.D.
-0.5
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.5
+0.1
-4.4
N.D.
-0.6
lb
LB
-0.2
-0.1
-4.8
N.D.
+0.1
stress
Paraquat dichloride 0.04 mg/ml
-0.3
-0.5
-4.5
N.D.
+0.3
stress
Vancomycin 0.03 mg/ml
-0.1
+0.2
-4.9
N.D.
-0.2
carbon source
a-Ketoglutaric (C)
+0.3
-0.2
-4.8
N.D.
-0.2
stress
Sisomicin 0.01 mg/ml
-0.3
-0.2
-4.5
N.D.
+0.3
lb
LB
-0.1
+0.1
-4.7
N.D.
-0.1
carbon source
a-Ketoglutaric (C)
+0.1
+0.0
-4.8
N.D.
+0.0
stress
nitrate 100 mM
+0.4
+0.1
-5.2
N.D.
+0.2
carbon source
D,L-Lactate (C)
-0.1
-0.3
-3.6
N.D.
-0.5
motility
inner cut, LB soft agar motility assay
+0.4
+0.2
-4.2
N.D.
-0.5
stress
Paraquat dichloride 0.02 mg/ml
+0.2
+0.4
-4.5
N.D.
-0.0
carbon source
butyrate (C)
-0.3
-0.4
-2.8
N.D.
-0.4
motility
inner cut, LB soft agar motility assay
+0.3
+0.0
-4.1
N.D.
+0.1
stress
copper (II) chloride 2 mM
-0.5
-0.3
-3.0
N.D.
+0.2
stress
Aluminum chloride 5 mM
-0.0
-0.1
-3.1
N.D.
-0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.3
+0.2
-4.0
N.D.
+0.0
carbon source
pyruvate (C)
+0.2
-0.1
-3.6
N.D.
+0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.1
-0.2
-3.4
N.D.
+0.2
motility
outer cut, LB soft agar motility assay
+0.2
+0.3
-4.0
N.D.
+0.4
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
+0.1
-2.9
N.D.
-0.1
nitrogen source
L-Glutamic (N)
-0.8
+0.4
-3.0
N.D.
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.2
+0.5
-1.6
N.D.
-0.3
stress
2-pentyl-furan 2.671 mM
-0.6
-2.1
+0.5
N.D.
-0.3
stress
3-octanone 6.3476 mM
-0.5
-1.2
-1.4
N.D.
+0.9
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