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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS25615 and AZOBR_RS25620 are separated by 78 nucleotides
AZOBR_RS25620 and AZOBR_RS25625 are separated by 63 nucleotides
AZOBR_RS25625 and AZOBR_RS25630 are separated by 23 nucleotides
AZOBR_RS25630 and AZOBR_RS25635 overlap by 4 nucleotides
AZOBR_RS25615: AZOBR_RS25615 - chemotaxis protein, at 795,711 to 797,153
_RS25615
AZOBR_RS25620: AZOBR_RS25620 - 2-amino-thiazoline-4-carboxylic acid hydrolase, at 797,232 to 797,696
_RS25620
AZOBR_RS25625: AZOBR_RS25625 - leucine/isoleucine/valine transporter ATP-binding subunit, at 797,760 to 798,458
_RS25625
AZOBR_RS25630: AZOBR_RS25630 - ABC transporter, at 798,482 to 799,249
_RS25630
AZOBR_RS25635: AZOBR_RS25635 - high-affinity branched-chain amino acid ABC transporter (permease protein) (fragment), at 799,246 to 800,232
_RS25635
Group
Condition
AZOBR
_RS25615
AZOBR
_RS25620
AZOBR
_RS25625
AZOBR
_RS25630
AZOBR
_RS25635
nitrogen source
L-Glutamic (N)
-0.3
-0.2
N.D.
-3.0
-0.1
nitrogen source
L-Phenylalanine (N)
-0.4
-1.1
N.D.
-0.5
-0.0
nitrogen source
L-Leucine (N)
-0.1
-0.7
N.D.
-1.0
+0.0
stress
1-octen-3-ol 0.6030326667 mM
-0.1
-0.5
N.D.
-0.8
-0.2
nitrogen source
Cytosine (N)
-0.5
-0.4
N.D.
-0.6
-0.1
stress
3-octanone 5.2896 mM
-0.2
+0.1
N.D.
-1.3
-0.1
stress
2-pentyl-furan 1.335528 mM
-0.7
-0.8
N.D.
+0.4
-0.3
stress
Cobalt chloride 0.3 mM
+0.6
-0.7
N.D.
-1.0
-0.4
stress
3-octanone 6.3476 mM
+0.2
-1.7
N.D.
+0.1
+0.0
stress
3-octanone 6.3476 mM
-0.5
-1.0
N.D.
+0.3
-0.0
nitrogen source
nitrate (N)
-0.3
-1.3
N.D.
+0.5
+0.0
nitrogen source
Urea (N)
-0.3
-0.9
N.D.
+0.5
-0.0
carbon source
D-Gluconic Acid (C)
+0.7
-0.4
N.D.
-0.8
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
-0.2
N.D.
-1.0
+0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.5
+0.4
N.D.
-0.6
+0.3
lb
LB
-0.4
-0.6
N.D.
+0.7
+0.3
nitrogen source
Glucuronamide (N)
-0.1
-0.7
N.D.
+0.8
+0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.4
+0.6
N.D.
-0.2
+0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.4
+0.9
N.D.
-0.4
+0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.3
+0.7
N.D.
-0.5
+0.3
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.6
+0.4
N.D.
+0.4
+0.3
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.0
+0.9
N.D.
-0.4
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.6
N.D.
+0.6
-0.1
nitrogen source
L-Isoleucine (N)
+0.3
+0.8
N.D.
+0.6
-0.3
motility
inner cut, LB soft agar motility assay
+1.9
-0.7
N.D.
-0.0
+0.3
lb
LB
-0.0
+0.7
N.D.
+0.6
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
+0.6
N.D.
+0.0
+0.3
nitrogen source
L-Phenylalanine (N)
-0.0
+0.9
N.D.
+1.2
-0.0
motility
outer cut, LB soft agar motility assay
+1.5
+0.6
N.D.
+0.4
+0.3
motility
inner cut, LB soft agar motility assay
+1.5
+0.7
N.D.
+1.0
+0.1
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