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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS25520 and AZOBR_RS25525 overlap by 4 nucleotides
AZOBR_RS25525 and AZOBR_RS25530 are separated by 156 nucleotides
AZOBR_RS25530 and AZOBR_RS25535 are separated by 49 nucleotides
AZOBR_RS25535 and AZOBR_RS25540 are separated by 70 nucleotides
AZOBR_RS25520: AZOBR_RS25520 - putative GDSL-like lipase/acylhydrolase domain containing protein, at 775,601 to 776,278
_RS25520
AZOBR_RS25525: AZOBR_RS25525 - hypothetical protein, at 776,275 to 777,486
_RS25525
AZOBR_RS25530: AZOBR_RS25530 - sugar aminotransferase, at 777,643 to 778,683
_RS25530
AZOBR_RS25535: AZOBR_RS25535 - hypothetical protein, at 778,733 to 779,932
_RS25535
AZOBR_RS25540: AZOBR_RS25540 - putative acetyltransferase protein, at 780,003 to 781,178
_RS25540
Group
Condition
AZOBR
_RS25520
AZOBR
_RS25525
AZOBR
_RS25530
AZOBR
_RS25535
AZOBR
_RS25540
motility
outer cut, LB soft agar motility assay
-0.1
-0.3
-2.7
-0.1
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.2
-2.1
+0.1
-0.6
nitrogen source
Glucuronamide (N)
-0.3
-0.5
-1.0
+0.1
+0.2
stress
Cobalt chloride 0.2 mM
-0.6
-0.4
-0.6
+0.3
-0.3
stress
3-octanone 6.3476 mM
+0.6
+0.2
-2.4
+0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.0
-1.6
+0.0
+0.6
lb
LB
-1.0
+0.1
-0.4
+0.2
+0.1
motility
inner cut, LB soft agar motility assay
-1.1
+0.6
-0.8
+0.7
-0.2
nitrogen source
L-Leucine (N)
-0.6
+0.2
-0.8
-0.0
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
-0.9
-0.2
+0.2
-0.3
stress
2-Furfuraldehyde 0.2 vol%
-0.9
-0.0
+0.4
+0.4
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.2
-0.1
-0.2
+0.8
+0.3
nitrogen source
L-Histidine (N)
-1.4
+0.4
-0.3
+0.4
+0.7
stress
2-pentyl-furan 1.335528 mM
+0.4
-0.2
+0.3
-1.0
+0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.4
-0.9
-0.3
+0.7
-0.0
motility
inner cut, LB soft agar motility assay
+1.4
+0.1
-1.7
+0.2
-0.1
stress
2-pentyl-furan 1.780666667 mM
+0.1
-0.0
-0.6
-0.6
+0.9
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.6
-0.3
+0.1
-0.3
+0.4
stress
2-pentyl-furan 1.780666667 mM
-0.2
+0.2
-0.2
+0.5
+1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.2
+0.6
-0.2
-0.3
+0.1
nitrogen source
L-Glutamic (N)
+1.1
+0.4
+0.1
+0.2
-0.3
stress
D-Cycloserine 0.125 mg/ml
-0.5
+0.6
+0.8
+0.4
+0.2
stress
Cobalt chloride 0.3 mM
+0.4
+0.9
+0.1
+0.3
-0.1
nitrogen source
Cytosine (N)
+0.6
+0.6
+0.2
+0.4
-0.1
nitrogen source
Glucuronamide (N)
+0.4
+0.5
+0.3
+0.5
+0.2
stress
2-pentyl-furan 2.671 mM
+0.6
+0.4
+0.4
+0.1
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
-0.3
+0.9
+0.1
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.5
-0.1
-0.0
+0.2
+0.6
lb
LB
+0.5
+0.4
+0.8
+0.1
+0.3
motility
inner cut, LB soft agar motility assay
+0.8
+0.4
+0.4
+0.6
-0.1
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