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Protein
Homologs
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS24485 and AZOBR_RS24490 are separated by 83 nucleotides
AZOBR_RS24490 and AZOBR_RS24500 are separated by 907 nucleotides
AZOBR_RS24500 and AZOBR_RS24505 are separated by 102 nucleotides
AZOBR_RS24505 and AZOBR_RS24510 are separated by 22 nucleotides
AZOBR_RS24485: AZOBR_RS24485 - aldehyde-activating protein, at 554,199 to 554,720
_RS24485
AZOBR_RS24490: AZOBR_RS24490 - hypothetical protein, at 554,804 to 555,649
_RS24490
AZOBR_RS24500: AZOBR_RS24500 - N(5) N(10)-methenyltetrahydromethanopterin cyclohydrolase, at 556,557 to 557,546
_RS24500
AZOBR_RS24505: AZOBR_RS24505 - hypothetical protein, at 557,649 to 558,743
_RS24505
AZOBR_RS24510: AZOBR_RS24510 - methylenetetrahydromethanopterin dehydrogenase, at 558,766 to 559,662
_RS24510
Group
Condition
AZOBR
_RS24485
AZOBR
_RS24490
AZOBR
_RS24500
AZOBR
_RS24505
AZOBR
_RS24510
motility
inner cut, LB soft agar motility assay
-0.2
+0.1
-0.6
-0.9
-1.0
stress
Cobalt chloride 0.2 mM
+0.1
+0.0
-0.6
+0.1
-1.3
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-0.6
-0.2
-0.0
-0.4
-0.3
stress
Paraquat dichloride 0.04 mg/ml
-0.5
-0.3
-0.2
-0.0
-0.5
carbon source
D-Lactate (C)
-0.4
-0.3
-0.1
-0.0
-0.6
nitrogen source
L-Glutamic (N)
-0.9
-0.1
-0.1
+0.3
-0.4
stress
3-octanone 6.3476 mM
+0.6
-0.6
-0.0
-0.9
-0.1
stress
3-octanone 5.2896 mM
+0.3
-0.5
-0.1
-0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.2
-0.2
+0.4
-1.0
nitrogen source
L-Lysine (N)
-0.4
+0.3
+0.1
-0.1
-0.5
stress
2-pentyl-furan 1.335528 mM
+0.3
-0.7
-0.2
+0.6
-0.3
carbon source
D-Gluconic Acid (C)
-0.4
-0.1
+0.5
-0.3
+0.1
stress
D-Cycloserine 0.125 mg/ml
+0.5
+0.4
+0.1
-0.4
-0.8
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.5
+0.4
+0.1
+0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.4
+0.2
-0.5
+0.8
motility
inner cut, LB soft agar motility assay
-0.4
+0.3
-0.1
+0.7
-0.5
stress
2-Furfuraldehyde 0.2 vol%
+0.2
+0.5
-0.6
+0.2
-0.3
lb
LB
-0.3
+0.5
+0.1
-0.2
+0.4
carbon source
Ethanol (C)
-0.4
+0.4
+0.2
+0.0
+0.4
carbon source
L-Leucine (C)
-0.5
+0.3
+0.3
+0.2
+0.4
stress
1-octen-3-ol 0.6030326667 mM
+0.5
-0.4
+0.1
+0.3
+0.3
carbon source
D-Gluconic Acid (C)
-0.3
+0.6
+0.3
+0.1
+0.2
stress
3-octanone 5.2896 mM
+0.4
+0.4
-0.2
+0.1
+0.3
stress
3-octanone 6.3476 mM
+0.4
+0.3
-0.2
-0.2
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.1
+0.1
+0.5
+0.8
stress
2-pentyl-furan 1.780666667 mM
+0.5
+0.2
-0.2
+0.8
-0.2
stress
2-pentyl-furan 1.335528 mM
+0.4
+0.5
-0.1
+0.4
+0.1
stress
1-octen-3-ol 0.6030326667 mM
+0.2
+0.4
+0.2
-0.2
+0.6
nitrogen source
L-Histidine (N)
+0.0
+0.6
+0.4
+0.1
+0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.4
+0.3
+0.1
+0.2
+0.4
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