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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS24290 and AZOBR_RS24295 are separated by 53 nucleotides
AZOBR_RS24295 and AZOBR_RS24300 are separated by 201 nucleotides
AZOBR_RS24300 and AZOBR_RS24310 are separated by 2646 nucleotides
AZOBR_RS24310 and AZOBR_RS24315 are separated by 31 nucleotides
AZOBR_RS24290: AZOBR_RS24290 - ribonucleotide-diphosphate reductase subunit alpha, at 495,877 to 497,751
_RS24290
AZOBR_RS24295: AZOBR_RS24295 - ribonucleotide-diphosphate reductase subunit beta, at 497,805 to 498,896
_RS24295
AZOBR_RS24300: AZOBR_RS24300 - methylcitrate synthase, at 499,098 to 500,261
_RS24300
AZOBR_RS24310: AZOBR_RS24310 - 3-methylitaconate isomerase, at 502,908 to 504,113
_RS24310
AZOBR_RS24315: AZOBR_RS24315 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 504,145 to 505,005
_RS24315
Group
Condition
AZOBR
_RS24290
AZOBR
_RS24295
AZOBR
_RS24300
AZOBR
_RS24310
AZOBR
_RS24315
nitrogen source
L-Histidine (N)
-0.6
-0.6
-0.0
-0.8
-0.3
stress
D-Cycloserine 0.125 mg/ml
-0.4
-0.5
-0.2
-0.3
+0.3
stress
Cobalt chloride 0.2 mM
-0.2
-0.0
-0.1
-0.4
-0.5
motility
inner cut, LB soft agar motility assay
+0.1
-0.1
+0.1
-0.8
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.2
+0.1
-0.4
-0.4
motility
inner cut, LB soft agar motility assay
-0.1
-0.2
-0.1
-0.7
+0.1
carbon source
D-Gluconic Acid (C)
+0.1
-0.0
-0.2
-0.5
-0.2
nitrogen source
L-Lysine (N)
-0.1
+0.0
+0.0
-0.8
-0.1
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.1
-0.2
-0.3
+0.1
-0.4
motility
outer cut, LB soft agar motility assay
-0.5
+0.0
-0.2
+0.2
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.4
-0.3
-0.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.2
-0.5
-0.4
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.1
-0.2
-0.5
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.4
-0.4
-0.4
+0.7
stress
1-octen-3-ol 0.6784116667 mM
-0.5
-0.2
+0.0
+0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.1
-0.1
-0.5
+0.6
stress
Benzethonium chloride 0.003 mM
+0.1
-0.1
+0.1
-0.6
+0.1
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.1
+0.4
+0.0
+0.0
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.2
-0.2
-0.4
+1.1
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
+0.2
+0.1
+0.1
+0.4
-0.2
lb no stress control
LB no stress control
-0.1
+0.2
-0.1
+0.4
+0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.1
+0.0
+0.2
+0.7
-0.2
stress
2-pentyl-furan 2.671 mM
-0.0
+0.4
-0.3
+0.3
+0.3
motility
inner cut, LB soft agar motility assay
+0.4
-0.2
+0.2
+0.8
-0.4
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.2
+0.3
+0.2
+0.3
-0.2
stress
2-pentyl-furan 1.780666667 mM
+0.6
+0.0
+0.1
-0.3
+0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.2
+0.1
+0.0
+0.6
-0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.2
+0.3
+0.2
+0.3
-0.1
stress
2-pentyl-furan 1.335528 mM
+0.1
+0.2
-0.1
+0.4
+0.3
stress
2-pentyl-furan 1.780666667 mM
+0.1
+0.2
-0.2
+0.5
+0.3
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