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Homologs
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS23555 and AZOBR_RS23560 are separated by 107 nucleotides
AZOBR_RS23560 and AZOBR_RS23565 overlap by 4 nucleotides
AZOBR_RS23565 and AZOBR_RS23575 are separated by 2538 nucleotides
AZOBR_RS23575 and AZOBR_RS23580 are separated by 221 nucleotides
AZOBR_RS23555: AZOBR_RS23555 - beta-lactamase, at 315,105 to 315,995
_RS23555
AZOBR_RS23560: AZOBR_RS23560 - LysR family transcriptional regulator, at 316,103 to 316,978
_RS23560
AZOBR_RS23565: AZOBR_RS23565 - D-threo-aldose 1-dehydrogenase, at 316,975 to 317,925
_RS23565
AZOBR_RS23575: AZOBR_RS23575 - ABC transporter, at 320,464 to 321,519
_RS23575
AZOBR_RS23580: AZOBR_RS23580 - membrane protein, at 321,741 to 322,877
_RS23580
Group
Condition
AZOBR
_RS23555
AZOBR
_RS23560
AZOBR
_RS23565
AZOBR
_RS23575
AZOBR
_RS23580
stress
2-pentyl-furan 1.335528 mM
+0.4
-4.0
-0.2
+0.1
-1.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.8
-0.6
-0.6
-0.3
-1.1
lb
LB
-1.0
-1.2
-0.7
-0.6
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.1
-1.4
-0.8
-0.5
+0.2
stress
Cobalt chloride 0.2 mM
-1.4
-0.6
-0.1
+0.0
-0.5
stress
Paraquat dichloride 0.02 mg/ml
-1.2
-0.7
-0.0
-0.0
-0.6
motility
inner cut, LB soft agar motility assay
-0.8
-1.0
-0.1
-0.2
-0.2
stress
D-Cycloserine 0.125 mg/ml
-1.8
+0.4
-0.7
+0.7
-1.0
stress
3-octanone 6.3476 mM
-1.0
-0.3
-0.1
-0.6
-0.1
stress
3-octanone 6.3476 mM
+0.5
+0.3
-0.3
-0.4
-1.9
carbon source
D-Gluconic Acid (C)
+0.3
-0.8
-0.3
-0.2
-0.6
stress
2-pentyl-furan 1.780666667 mM
-1.8
+0.6
-0.3
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
-1.3
+0.0
+0.3
-0.5
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.1
+0.3
+0.5
-0.5
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.5
+0.2
+0.1
+0.2
-0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.6
+0.8
-0.1
-0.1
-1.2
stress
2-pentyl-furan 2.671 mM
+0.3
-0.4
+0.0
+0.2
-0.9
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-1.0
+0.3
+0.1
+0.3
-0.4
motility
inner cut, LB soft agar motility assay
+0.2
-1.1
+0.4
+0.0
-0.2
stress
Paraquat dichloride 0.04 mg/ml
-0.9
-0.3
+0.5
+0.3
-0.1
stress
1-octen-3-ol 0.6030326667 mM
-0.4
+0.8
-0.1
-0.3
-0.3
stress
2-pentyl-furan 1.335528 mM
+0.9
-0.3
+0.2
-0.3
-0.7
stress
Sisomicin 0.01 mg/ml
-0.3
+0.9
+0.1
-0.4
-0.4
stress
2-pentyl-furan 1.780666667 mM
+1.1
+0.2
+0.0
-0.6
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.5
+0.3
+0.2
-0.7
stress
2-pentyl-furan 1.335528 mM
+0.5
+0.2
-0.2
-0.1
+0.9
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+1.0
+0.8
+0.2
+0.3
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
+1.4
-0.3
+0.2
+0.1
nitrogen source
L-Isoleucine (N)
+1.6
+0.3
-0.1
-0.1
+0.5
stress
2-pentyl-furan 1.780666667 mM
+0.9
+0.6
+0.1
+0.3
+0.6
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