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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS23505 and AZOBR_RS23510 are separated by 35 nucleotides
AZOBR_RS23510 and AZOBR_RS23515 are separated by 421 nucleotides
AZOBR_RS23515 and AZOBR_RS23520 are separated by 31 nucleotides
AZOBR_RS23520 and AZOBR_RS23525 are separated by 4 nucleotides
AZOBR_RS23505: AZOBR_RS23505 - N-formimino-L-glutamate deiminase, at 302,491 to 303,879
_RS23505
AZOBR_RS23510: AZOBR_RS23510 - N-formylglutamate amidohydrolase, at 303,915 to 304,715
_RS23510
AZOBR_RS23515: AZOBR_RS23515 - ABC transporter permease, at 305,137 to 305,799
_RS23515
AZOBR_RS23520: AZOBR_RS23520 - ABC transporter permease, at 305,831 to 306,493
_RS23520
AZOBR_RS23525: AZOBR_RS23525 - ABC transporter ATP-binding protein, at 306,498 to 307,307
_RS23525
Group
Condition
AZOBR
_RS23505
AZOBR
_RS23510
AZOBR
_RS23515
AZOBR
_RS23520
AZOBR
_RS23525
stress
3-octanone 6.3476 mM
+0.2
-0.0
+0.1
+0.2
-2.5
nitrogen source
L-Glutamic (N)
-0.7
-0.2
-0.1
+0.0
-0.7
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
-0.2
+0.0
-0.1
+0.1
-1.2
carbon source
D-Gluconic Acid (C)
-0.1
-0.3
-0.2
-0.2
-0.5
stress
Benzethonium chloride 0.003 mM
-0.3
-1.1
-0.1
+0.3
+0.3
stress
2-pentyl-furan 1.780666667 mM
-0.2
+0.3
+0.1
-0.2
-0.3
stress
Cobalt chloride 0.2 mM
+0.1
+0.5
-0.0
-0.2
-0.7
stress
3-octanone 6.3476 mM
-0.1
+0.3
+0.2
+0.1
-0.7
stress
3-octanone 4.2317 mM
+0.3
+0.2
+0.1
+0.1
-0.8
stress
Paraquat dichloride 0.04 mg/ml
+0.1
+0.9
-0.3
-0.2
-0.6
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.3
+0.4
+0.0
-0.3
-0.3
stress
2-pentyl-furan 1.780666667 mM
+0.3
+0.3
+0.1
-0.0
-0.5
stress
1-octen-3-ol 0.6784116667 mM
+0.2
+0.5
+0.0
+0.1
-0.6
stress
Chlorite 1 mM
+0.1
+0.8
+0.0
-0.3
-0.1
stress
Paraquat dichloride 0.02 mg/ml
+0.4
+1.2
-0.1
-0.2
-0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+1.2
-0.2
-0.4
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.7
+0.1
-0.2
+0.1
lb
LB
+0.2
+1.0
-0.1
-0.0
-0.0
lb
LB
+0.2
+1.2
-0.3
-0.0
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+1.3
-0.2
-0.3
+0.2
anaerobic; rich media
LB; anaerobic
+0.5
+0.9
+0.1
+0.0
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.6
+0.0
-0.3
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+1.0
-0.2
+0.2
+0.2
motility
outer cut, LB soft agar motility assay
+0.4
+1.4
-0.0
-0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+1.1
-0.2
+0.1
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+1.0
+0.2
+0.0
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.7
+0.0
-0.1
+1.0
motility
inner cut, LB soft agar motility assay
+0.5
+2.5
-0.1
-0.0
-0.9
motility
inner cut, LB soft agar motility assay
+0.6
+2.2
+0.1
+0.1
-0.4
motility
inner cut, LB soft agar motility assay
+0.6
+2.2
-0.0
+0.2
+0.4
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