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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS23500 and AZOBR_RS23505 overlap by 4 nucleotides
AZOBR_RS23505 and AZOBR_RS23510 are separated by 35 nucleotides
AZOBR_RS23510 and AZOBR_RS23515 are separated by 421 nucleotides
AZOBR_RS23515 and AZOBR_RS23520 are separated by 31 nucleotides
AZOBR_RS23500: AZOBR_RS23500 - transcriptional regulator IclR family, at 301,706 to 302,494
_RS23500
AZOBR_RS23505: AZOBR_RS23505 - N-formimino-L-glutamate deiminase, at 302,491 to 303,879
_RS23505
AZOBR_RS23510: AZOBR_RS23510 - N-formylglutamate amidohydrolase, at 303,915 to 304,715
_RS23510
AZOBR_RS23515: AZOBR_RS23515 - ABC transporter permease, at 305,137 to 305,799
_RS23515
AZOBR_RS23520: AZOBR_RS23520 - ABC transporter permease, at 305,831 to 306,493
_RS23520
Group
Condition
AZOBR
_RS23500
AZOBR
_RS23505
AZOBR
_RS23510
AZOBR
_RS23515
AZOBR
_RS23520
stress
Benzethonium chloride 0.003 mM
-1.5
-0.3
-1.1
-0.1
+0.3
nitrogen source
L-Threonine (N)
-0.6
-0.2
-0.4
-0.1
-0.1
stress
D-Cycloserine 0.125 mg/ml
-0.8
-0.3
-0.2
-0.2
+0.1
nitrogen source
D-Alanine (N)
-0.4
-0.3
-0.4
-0.1
-0.0
nitrogen source
L-Glutamic (N)
-0.4
-0.7
-0.2
-0.1
+0.0
nitrogen source
L-Threonine (N)
-0.5
-0.4
-0.3
+0.0
+0.1
nitrogen source
nitrate (N)
-0.4
-0.2
-0.4
+0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
-0.0
+0.5
-0.2
-0.3
stress
Chlorite 1 mM
+0.5
+0.1
+0.8
+0.0
-0.3
stress
benzoic 0.29 mg/ml
+0.6
+0.1
+0.4
-0.0
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.2
+0.6
+0.0
-0.3
stress
3-octanone 5.2896 mM
+0.5
+0.0
+0.4
+0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.3
+0.7
+0.1
-0.2
stress
Paraquat dichloride 0.04 mg/ml
+0.9
+0.1
+0.9
-0.3
-0.2
lb
LB
+0.6
+0.1
+0.8
+0.0
-0.2
stress
nitrate 100 mM
+0.6
+0.1
+0.6
+0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
+0.3
+0.7
+0.0
-0.1
lb
LB
+0.7
+0.2
+1.2
-0.3
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
+0.2
+1.3
-0.2
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
+0.1
+1.0
-0.2
+0.2
lb
LB
+0.9
+0.2
+1.0
-0.1
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.1
+0.1
+1.1
-0.2
+0.1
stress
Paraquat dichloride 0.02 mg/ml
+1.0
+0.4
+1.2
-0.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.1
+0.7
+1.2
-0.2
-0.4
anaerobic; rich media
LB; anaerobic
+1.1
+0.5
+0.9
+0.1
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.1
+0.2
+1.0
+0.2
+0.0
motility
outer cut, LB soft agar motility assay
+1.3
+0.4
+1.4
-0.0
-0.2
motility
inner cut, LB soft agar motility assay
+2.2
+0.6
+2.2
-0.0
+0.2
motility
inner cut, LB soft agar motility assay
+2.3
+0.6
+2.2
+0.1
+0.1
motility
inner cut, LB soft agar motility assay
+2.5
+0.5
+2.5
-0.1
-0.0
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