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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS23320 and AZOBR_RS23325 are separated by 466 nucleotides
AZOBR_RS23325 and AZOBR_RS23330 are separated by 610 nucleotides
AZOBR_RS23330 and AZOBR_RS23335 are separated by 24 nucleotides
AZOBR_RS23335 and AZOBR_RS23340 are separated by 208 nucleotides
AZOBR_RS23320: AZOBR_RS23320 - C4-dicarboxylate ABC transporter permease, at 256,912 to 258,414
_RS23320
AZOBR_RS23325: AZOBR_RS23325 - RNA polymerase sigma70, at 258,881 to 259,414
_RS23325
AZOBR_RS23330: AZOBR_RS23330 - hypothetical protein, at 260,025 to 262,013
_RS23330
AZOBR_RS23335: AZOBR_RS23335 - fecR protein, at 262,038 to 263,030
_RS23335
AZOBR_RS23340: AZOBR_RS23340 - cyclic peptide transporter, at 263,239 to 264,894
_RS23340
Group
Condition
AZOBR
_RS23320
AZOBR
_RS23325
AZOBR
_RS23330
AZOBR
_RS23335
AZOBR
_RS23340
motility
outer cut, LB soft agar motility assay
-0.5
-0.5
+0.0
-0.1
-0.2
stress
3-octanone 6.3476 mM
-0.1
-0.7
-0.1
-0.4
-0.1
stress
Cobalt chloride 0.2 mM
-0.3
-0.1
-0.1
-0.4
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.3
-0.0
-0.3
-0.3
stress
2-pentyl-furan 1.335528 mM
-0.0
+0.3
+0.1
-1.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.1
+0.1
-0.7
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.1
+0.1
-0.8
-0.4
stress
Chlorite 1 mM
+0.1
-0.1
-0.1
-0.4
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
-0.2
-0.5
+0.1
+0.2
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
-0.2
-0.3
+0.0
-0.5
+0.3
stress
1-octen-3-ol 0.7753276667 mM
-0.1
-0.5
+0.0
-0.3
+0.3
stress
3-octanone 6.3476 mM
-0.1
+0.3
+0.0
-0.5
-0.2
stress
Paraquat dichloride 0.04 mg/ml
-0.1
+0.4
-0.1
-0.5
-0.2
lb
LB
-0.2
-0.0
+0.1
-0.5
+0.2
carbon source
D-Gluconic Acid (C)
+0.3
+0.1
-0.1
+0.1
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.3
+0.1
-0.4
+0.4
nitrogen source
L-Threonine (N)
-0.1
-0.0
-0.2
+0.4
-0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.2
+0.5
+0.1
-0.0
-0.5
stress
2-pentyl-furan 1.780666667 mM
+0.2
-0.2
-0.0
-0.3
+0.3
stress
2-pentyl-furan 1.335528 mM
-0.2
-0.5
+0.2
+0.1
+0.3
lb no stress control
LB no stress control
-0.2
+0.2
-0.0
+0.3
-0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.4
+0.5
+0.0
-0.2
-0.0
nitrogen source
L-Isoleucine (N)
+0.1
+0.5
-0.2
+0.1
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.8
-0.1
-0.4
-0.3
stress
Sisomicin 0.01 mg/ml
-0.1
+0.4
+0.2
-0.4
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.8
+0.1
+0.0
-0.2
nitrogen source
casaminos (N)
-0.1
+0.5
-0.0
+0.4
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.7
+0.1
-0.7
+0.5
nitrogen source
nitrate (N)
+0.0
+0.4
+0.1
+0.3
+0.1
motility
inner cut, LB soft agar motility assay
+0.3
+0.8
+0.1
-0.2
+0.2
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