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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS22495 and AZOBR_RS22500 are separated by 293 nucleotides
AZOBR_RS22500 and AZOBR_RS22505 are separated by 14 nucleotides
AZOBR_RS22505 and AZOBR_RS22510 are separated by 176 nucleotides
AZOBR_RS22510 and AZOBR_RS22515 are separated by 79 nucleotides
AZOBR_RS22495: AZOBR_RS22495 - GntR family transcriptional regulator, at 57,746 to 58,432
_RS22495
AZOBR_RS22500: AZOBR_RS22500 - methylmalonate-semialdehyde dehydrogenase, at 58,726 to 60,225
_RS22500
AZOBR_RS22505: AZOBR_RS22505 - omega amino acid--pyruvate aminotransferase, at 60,240 to 61,550
_RS22505
AZOBR_RS22510: AZOBR_RS22510 - LysR family transcriptional regulator, at 61,727 to 62,689
_RS22510
AZOBR_RS22515: AZOBR_RS22515 - membrane protein of unknown function, at 62,769 to 63,329
_RS22515
Group
Condition
AZOBR
_RS22495
AZOBR
_RS22500
AZOBR
_RS22505
AZOBR
_RS22510
AZOBR
_RS22515
stress
2-pentyl-furan 1.780666667 mM
-0.4
-0.3
+0.1
-0.9
N.D.
motility
outer cut, LB soft agar motility assay
-0.1
-1.2
-0.1
+0.1
N.D.
stress
2-pentyl-furan 1.335528 mM
-0.5
-0.4
-0.2
+0.1
N.D.
lb
LB
-0.1
-0.6
-0.3
+0.0
N.D.
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.1
-0.0
-0.1
-0.8
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.6
+0.1
-0.5
N.D.
nitrogen source
L-Glutamic (N)
+0.3
-0.7
-0.0
-0.3
N.D.
nitrogen source
L-Leucine (N)
+0.1
-0.8
+0.1
-0.2
N.D.
stress
Benzethonium chloride 0.003 mM
-0.2
+0.3
+0.1
-1.0
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.2
-0.4
-0.2
+0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.8
+0.2
+0.0
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.4
+0.2
+0.1
N.D.
nitrogen source
L-Threonine (N)
-0.2
-0.4
-0.2
+0.3
N.D.
carbon source
L-Lactate (C)
+0.1
+0.0
+0.1
-0.6
N.D.
nitrogen source
Ammonium chloride (N)
-0.1
+0.4
+0.0
-0.6
N.D.
stress
3-octanone 6.3476 mM
-0.2
-0.2
+0.4
-0.3
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.1
-0.3
-0.1
+0.3
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.9
+0.2
+0.2
N.D.
nitrogen source
L-Phenylalanine (N)
-0.3
+0.5
+0.0
-0.2
N.D.
stress
Cobalt chloride 0.2 mM
+0.2
-0.5
-0.1
+0.3
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.5
-0.1
+0.5
N.D.
stress
2-pentyl-furan 2.671 mM
-0.4
+0.1
-0.0
+0.4
N.D.
stress
Cobalt chloride 0.3 mM
+0.2
-0.2
+0.2
+0.2
N.D.
stress
2-pentyl-furan 1.780666667 mM
-0.2
+0.3
+0.5
-0.0
N.D.
stress
2-pentyl-furan 1.335528 mM
+0.4
+0.1
-0.3
+0.4
N.D.
motility
inner cut, LB soft agar motility assay
+0.0
+0.4
+0.0
+0.4
N.D.
nitrogen source
L-Isoleucine (N)
+0.5
+0.4
+0.2
+0.0
N.D.
stress
D-Cycloserine 0.125 mg/ml
+0.5
+0.7
-0.1
+0.0
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.1
+0.1
+0.8
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.2
+0.4
+1.2
N.D.
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