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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS22475 and AZOBR_RS22480 are separated by 188 nucleotides
AZOBR_RS22480 and AZOBR_RS22485 are separated by 79 nucleotides
AZOBR_RS22485 and AZOBR_RS22490 are separated by 357 nucleotides
AZOBR_RS22490 and AZOBR_RS22495 are separated by 35 nucleotides
AZOBR_RS22475: AZOBR_RS22475 - hypothetical protein, at 53,661 to 54,167
_RS22475
AZOBR_RS22480: AZOBR_RS22480 - tricarboxylate transporter, at 54,356 to 55,882
_RS22480
AZOBR_RS22485: AZOBR_RS22485 - hypothetical protein, at 55,962 to 56,666
_RS22485
AZOBR_RS22490: AZOBR_RS22490 - conserved hypothetical protein with CBS domain, at 57,024 to 57,710
_RS22490
AZOBR_RS22495: AZOBR_RS22495 - GntR family transcriptional regulator, at 57,746 to 58,432
_RS22495
Group
Condition
AZOBR
_RS22475
AZOBR
_RS22480
AZOBR
_RS22485
AZOBR
_RS22490
AZOBR
_RS22495
stress
2-pentyl-furan 1.780666667 mM
-0.2
-0.4
-0.3
N.D.
-0.4
stress
2-pentyl-furan 1.335528 mM
-0.2
-0.0
-0.4
N.D.
-0.2
stress
1-octen-3-ol 0.6030326667 mM
-0.4
-0.2
-0.0
N.D.
-0.1
stress
2-pentyl-furan 1.335528 mM
-0.0
-0.1
+0.2
N.D.
-0.5
stress
3-octanone 6.3476 mM
-0.6
+0.1
+0.0
N.D.
+0.1
stress
3-octanone 6.3476 mM
-0.5
-0.2
+0.5
N.D.
-0.2
nitrogen source
casaminos (N)
+0.2
+0.1
-0.5
N.D.
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.3
+0.0
N.D.
+0.0
stress
2-pentyl-furan 2.671 mM
-0.4
+0.0
+0.5
N.D.
-0.4
nitrogen source
L-Threonine (N)
+0.1
+0.3
-0.3
N.D.
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
-0.1
-0.2
+0.3
N.D.
-0.1
stress
1-octen-3-ol 0.7753276667 mM
-0.3
-0.1
+0.2
N.D.
+0.1
carbon source
D,L-Lactate (C)
+0.3
+0.0
-0.4
N.D.
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.0
+0.2
N.D.
+0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.0
-0.2
+0.7
N.D.
-0.2
stress
2-pentyl-furan 1.335528 mM
-0.2
-0.0
+0.2
N.D.
+0.4
stress
D-Cycloserine 0.125 mg/ml
+0.2
+0.0
-0.3
N.D.
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.1
+0.6
N.D.
+0.1
nitrogen source
L-Isoleucine (N)
-0.6
+0.0
+0.5
N.D.
+0.5
stress
Benzethonium chloride 0.003 mM
+0.1
+0.0
+0.4
N.D.
-0.2
carbon source
D-Gluconic Acid (C)
-0.3
+0.1
+0.3
N.D.
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.1
-0.2
N.D.
+0.4
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.2
+0.1
+0.4
N.D.
-0.1
stress
Cobalt chloride 0.2 mM
+0.2
+0.3
-0.1
N.D.
+0.2
motility
inner cut, LB soft agar motility assay
-0.3
+0.2
+0.6
N.D.
+0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.5
-0.0
+0.3
N.D.
+0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.3
+0.0
+0.7
N.D.
-0.1
stress
Nickel (II) chloride 0.5 mM
+0.2
+0.0
+0.4
N.D.
+0.4
carbon source
butyrate (C)
+0.4
+0.2
+0.3
N.D.
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
+0.3
+0.1
N.D.
+0.5
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AZOBR_RS22485
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