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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS21730 and AZOBR_RS21735 overlap by 4 nucleotides
AZOBR_RS21735 and AZOBR_RS21740 are separated by 43 nucleotides
AZOBR_RS21740 and AZOBR_RS21750 are separated by 1872 nucleotides
AZOBR_RS21750 and AZOBR_RS21755 are separated by 30 nucleotides
AZOBR_RS21730: AZOBR_RS21730 - hypothetical protein, at 1,651,534 to 1,651,782
_RS21730
AZOBR_RS21735: AZOBR_RS21735 - hypothetical protein, at 1,651,779 to 1,652,204
_RS21735
AZOBR_RS21740: AZOBR_RS21740 - urocanate hydratase, at 1,652,248 to 1,653,936
_RS21740
AZOBR_RS21750: AZOBR_RS21750 - S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB, at 1,655,809 to 1,656,573
_RS21750
AZOBR_RS21755: AZOBR_RS21755 - acetyltransferase gnat family, at 1,656,604 to 1,657,074
_RS21755
Group
Condition
AZOBR
_RS21730
AZOBR
_RS21735
AZOBR
_RS21740
AZOBR
_RS21750
AZOBR
_RS21755
stress
2-pentyl-furan 1.780666667 mM
N.D.
-0.5
+0.1
-1.2
-1.2
nitrogen source
L-Phenylalanine (N)
N.D.
-0.3
-0.2
-1.0
-0.4
nitrogen source
Parabanic Acid (N)
N.D.
-0.2
+0.0
-1.3
-0.2
motility
inner cut, LB soft agar motility assay
N.D.
+0.1
-0.0
-0.9
-0.7
nitrogen source
L-Serine (N)
N.D.
-0.2
-0.0
-1.3
-0.0
nitrogen source
L-Isoleucine (N)
N.D.
-0.1
+0.0
-0.7
-0.6
nitrogen source
L-Threonine (N)
N.D.
-0.3
-0.3
-0.8
+0.2
motility
outer cut, LB soft agar motility assay
N.D.
-0.2
-0.3
-0.9
+0.5
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
N.D.
+0.3
+0.1
-0.9
-0.4
nitrogen source
L-Histidine (N)
N.D.
-0.7
-0.5
-0.0
+0.4
stress
3-octanone 6.3476 mM
N.D.
+0.3
-0.6
-0.5
+0.1
stress
Cobalt chloride 0.3 mM
N.D.
-0.0
-0.2
-1.4
+0.9
nitrogen source
Glucuronamide (N)
N.D.
-0.4
-0.1
-0.6
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.5
+0.2
+0.2
-0.6
stress
Cobalt chloride 0.2 mM
N.D.
-0.2
-0.2
+0.6
-0.7
stress
2-pentyl-furan 1.335528 mM
N.D.
+0.3
-0.2
+1.1
-1.5
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
N.D.
+0.1
+0.2
-1.0
+0.2
stress
D-Cycloserine 0.125 mg/ml
N.D.
+0.4
-0.1
-0.7
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+2.4
+0.3
-1.0
-1.1
nitrogen source
L-Glutamic (N)
N.D.
+0.7
-0.2
+0.4
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.8
-0.1
+0.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.2
-0.3
+0.5
+0.6
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
+0.6
+0.2
+0.5
-0.2
stress
Benzethonium chloride 0.003 mM
N.D.
+0.8
-0.2
+0.1
+0.4
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
N.D.
+0.5
+0.2
+0.7
-0.2
stress
3-octanone 6.3476 mM
N.D.
+0.2
-0.1
+1.0
+0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
+0.9
+0.1
+0.8
+0.0
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
N.D.
+0.6
+0.1
+1.0
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.8
+0.2
+1.6
-0.6
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
+0.3
+0.1
+1.1
+0.6
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AZOBR_RS21740
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