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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS21140 and AZOBR_RS21145 are separated by 164 nucleotides
AZOBR_RS21145 and AZOBR_RS21150 are separated by 92 nucleotides
AZOBR_RS21150 and AZOBR_RS21155 are separated by 111 nucleotides
AZOBR_RS21155 and AZOBR_RS21160 are separated by 232 nucleotides
AZOBR_RS21140: AZOBR_RS21140 - C4-dicarboxylate ABC transporter, at 1,523,617 to 1,524,918
_RS21140
AZOBR_RS21145: AZOBR_RS21145 - NADP-dependent malic enzyme, at 1,525,083 to 1,527,401
_RS21145
AZOBR_RS21150: AZOBR_RS21150 - N-acetylglucosaminyltransferase, at 1,527,494 to 1,529,161
_RS21150
AZOBR_RS21155: AZOBR_RS21155 - hypothetical protein, at 1,529,273 to 1,529,974
_RS21155
AZOBR_RS21160: AZOBR_RS21160 - hypothetical protein, at 1,530,207 to 1,530,782
_RS21160
Group
Condition
AZOBR
_RS21140
AZOBR
_RS21145
AZOBR
_RS21150
AZOBR
_RS21155
AZOBR
_RS21160
carbon source
succinate (C)
-3.2
-3.1
-0.3
-0.8
-0.1
carbon source
succinate (C)
-3.1
-3.0
+0.1
-0.7
-0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.6
-0.5
+0.4
-5.5
-0.2
carbon source
L-Malic (C)
-2.2
-3.2
-0.0
-0.6
-0.0
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-1.1
-0.9
+0.4
-4.0
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.6
-1.0
+0.4
-4.0
-0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.6
-0.8
+0.2
-3.9
-0.4
stress
2-pentyl-furan 1.780666667 mM
-1.7
-0.8
-0.2
-2.4
-0.1
carbon source
L-Malic (C)
-1.9
-3.1
+0.4
-0.7
+0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-1.0
-0.2
-0.1
-3.8
-0.0
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.6
+0.3
+0.4
-4.9
-0.3
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.8
+0.6
-0.3
-4.1
-0.3
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-1.1
-0.0
+0.3
-4.2
+0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.7
-0.6
+0.7
-3.6
-0.5
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
-0.1
+0.1
+0.4
-4.6
+0.1
stress
2-pentyl-furan 1.335528 mM
-0.2
-0.9
-0.0
-2.3
+0.0
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.2
-2.9
+0.3
-0.3
-0.1
stress
2-pentyl-furan 1.335528 mM
+0.4
-0.3
-0.4
-2.9
-0.1
stress
Sisomicin 0.01 mg/ml
-0.1
-2.7
+0.3
+0.0
-0.6
stress
3-octanone 6.3476 mM
-1.3
-0.4
-0.0
-0.5
-0.8
stress
Benzethonium chloride 0.003 mM
-0.6
-1.8
-0.5
+0.1
+0.1
stress
2-pentyl-furan 1.780666667 mM
+0.3
-0.7
+0.2
-2.4
+0.5
motility
outer cut, LB soft agar motility assay
+1.0
-0.6
+0.3
-2.5
-0.2
motility
inner cut, LB soft agar motility assay
+0.1
-0.4
-0.5
-1.6
+0.3
stress
2-pentyl-furan 1.335528 mM
+0.5
-1.4
-0.3
-0.5
-0.3
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.1
-2.3
+0.3
+0.1
-0.1
stress
Paraquat dichloride 0.04 mg/ml
+0.8
-1.1
-0.6
-0.4
-0.5
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.3
-2.0
+0.4
-0.1
+0.3
stress
2-pentyl-furan 1.780666667 mM
+0.5
-1.2
+0.1
-0.4
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
-0.9
+0.1
+1.0
+0.4
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