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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS20085 and AZOBR_RS20090 are separated by 48 nucleotides
AZOBR_RS20090 and AZOBR_RS20095 are separated by 54 nucleotides
AZOBR_RS20095 and AZOBR_RS20100 overlap by 4 nucleotides
AZOBR_RS20100 and AZOBR_RS20105 are separated by 14 nucleotides
AZOBR_RS20085: AZOBR_RS20085 - chemotaxis protein CheW, at 1,272,221 to 1,272,721
_RS20085
AZOBR_RS20090: AZOBR_RS20090 - chemotaxis protein CheY, at 1,272,770 to 1,273,135
_RS20090
AZOBR_RS20095: AZOBR_RS20095 - chemotaxis protein CheY, at 1,273,190 to 1,274,374
_RS20095
AZOBR_RS20100: AZOBR_RS20100 - chemotaxis protein CheR, at 1,274,371 to 1,275,216
_RS20100
AZOBR_RS20105: AZOBR_RS20105 - transcriptional regulator, at 1,275,231 to 1,276,136
_RS20105
Group
Condition
AZOBR
_RS20085
AZOBR
_RS20090
AZOBR
_RS20095
AZOBR
_RS20100
AZOBR
_RS20105
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-4.1
-4.6
-3.0
-2.9
-0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-3.8
-4.0
-3.2
-3.2
-0.0
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-3.9
-3.8
-3.6
-3.0
+0.3
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-5.6
-2.8
-2.5
-2.9
+0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-5.2
-1.8
-2.7
-3.3
-0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-3.9
-3.6
-3.1
-2.1
+0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-3.6
-2.8
-3.0
-3.0
+0.0
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-5.1
-2.6
-2.4
-2.1
+0.1
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
-3.4
-3.2
-2.6
-3.0
+0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-3.7
-2.5
-2.1
-2.7
-0.1
motility
outer cut, LB soft agar motility assay
-2.4
-4.9
-0.5
-1.1
-0.2
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-1.0
-3.1
-1.1
-2.2
-0.1
motility
inner cut, LB soft agar motility assay
+0.5
-5.0
-1.2
+2.3
-0.5
stress
2-pentyl-furan 1.780666667 mM
-0.2
-2.3
-0.8
-0.1
-0.3
stress
2-pentyl-furan 1.335528 mM
-0.8
-0.9
-1.4
-0.5
+0.1
stress
2-pentyl-furan 1.780666667 mM
-0.4
-0.3
-2.0
-0.7
+0.0
stress
2-pentyl-furan 1.780666667 mM
-0.6
-0.0
-1.0
-1.2
+0.1
stress
Sisomicin 0.01 mg/ml
+0.4
-1.7
-0.2
-0.5
+0.5
nitrogen source
L-Glutamic (N)
-0.5
-0.6
-1.1
+0.1
+0.6
nitrogen source
Cytosine (N)
-0.2
+0.8
-0.8
-0.9
-0.2
nitrogen source
L-Isoleucine (N)
-0.1
+1.5
-0.9
-1.0
-0.4
motility
inner cut, LB soft agar motility assay
-0.2
-2.2
-0.9
+2.2
+0.2
stress
2-Furfuraldehyde 0.2 vol%
-1.0
+0.2
-0.1
+0.8
+0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.6
+2.1
+0.7
-0.1
motility
inner cut, LB soft agar motility assay
+1.3
+0.1
-0.8
+2.1
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.1
+1.2
+1.4
+0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+1.1
+1.8
+0.6
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+1.5
+2.0
+0.0
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.0
+0.9
+2.3
-0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.6
+1.3
+1.6
+0.1
-0.1
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