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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS20035 and AZOBR_RS20040 are separated by 231 nucleotides
AZOBR_RS20040 and AZOBR_RS20045 are separated by 228 nucleotides
AZOBR_RS20045 and AZOBR_RS20050 are separated by 66 nucleotides
AZOBR_RS20050 and AZOBR_RS20060 are separated by 1358 nucleotides
AZOBR_RS20035: AZOBR_RS20035 - hypothetical protein, at 1,258,268 to 1,259,734
_RS20035
AZOBR_RS20040: AZOBR_RS20040 - chemotaxis protein MotB, at 1,259,966 to 1,261,024
_RS20040
AZOBR_RS20045: AZOBR_RS20045 - flavin reductase, at 1,261,253 to 1,261,732
_RS20045
AZOBR_RS20050: AZOBR_RS20050 - putative protease-like protein, at 1,261,799 to 1,263,787
_RS20050
AZOBR_RS20060: AZOBR_RS20060 - acyl-homoserine-lactone acylase, at 1,265,146 to 1,267,566
_RS20060
Group
Condition
AZOBR
_RS20035
AZOBR
_RS20040
AZOBR
_RS20045
AZOBR
_RS20050
AZOBR
_RS20060
carbon source
a-Ketoglutaric (C)
-0.1
-3.2
-2.4
-0.2
-0.1
nitrogen source
Parabanic Acid (N)
+0.1
-5.2
-0.7
+0.1
-0.3
nitrogen source
L-Isoleucine (N)
+1.0
-5.2
-1.2
-0.1
+0.3
nitrogen source
Parabanic Acid (N)
+0.1
-4.8
-0.1
-0.2
+0.0
carbon source
a-Ketoglutaric (C)
-0.0
-2.7
-1.9
-0.1
-0.2
carbon source
D-Gluconic Acid (C)
+0.2
-4.0
-0.9
-0.1
+0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.0
-4.0
-0.5
-0.0
-0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
+0.2
-4.1
-0.5
+0.1
-0.0
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
-0.1
-3.1
-0.7
-0.0
-0.1
stress
2-pentyl-furan 1.335528 mM
-0.0
-3.7
-0.4
+0.2
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.0
-2.8
-0.7
-0.1
-0.4
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
+0.0
-2.8
-0.7
-0.1
-0.2
stress
2-pentyl-furan 1.780666667 mM
-0.0
-2.7
-1.0
+0.0
+0.1
nitrogen source
Cytosine (N)
+0.0
-1.7
-1.8
-0.2
+0.1
nitrogen source
D-Alanine (N)
-0.1
-0.5
-2.8
+0.2
-0.4
carbon source
D-Fructose (C)
-0.1
-2.7
-0.5
-0.2
+0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.2
-3.1
-0.5
+0.0
-0.1
nitrogen source
L-Glutamic (N)
-0.5
+0.3
-3.3
+0.1
+0.0
carbon source
D-Lactate (C)
+0.0
-1.4
-2.0
-0.0
+0.3
carbon source
D-Gluconic Acid (C)
-0.0
-3.1
+0.0
+0.3
-0.0
nitrogen source
Cytosine (N)
+0.1
-0.9
-2.3
+0.3
-0.0
stress
2-pentyl-furan 1.780666667 mM
+0.1
-3.5
+0.4
+0.1
+0.0
stress
2-pentyl-furan 1.335528 mM
+0.1
-2.9
-0.3
+0.1
+0.3
stress
3-octanone 6.3476 mM
+0.5
-0.5
-2.2
+0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+1.4
-1.7
-0.2
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+1.5
-0.8
-0.1
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+2.4
-1.9
-0.1
-0.4
motility
outer cut, LB soft agar motility assay
+0.0
-1.3
+2.6
-0.0
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+2.4
-0.8
-0.1
-0.3
motility
inner cut, LB soft agar motility assay
+0.0
-0.2
+3.0
+0.2
-0.5
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