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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS19655 and AZOBR_RS19665 are separated by 1484 nucleotides
AZOBR_RS19665 and AZOBR_RS19670 are separated by 108 nucleotides
AZOBR_RS19670 and AZOBR_RS19675 are separated by 161 nucleotides
AZOBR_RS19675 and AZOBR_RS19680 are separated by 258 nucleotides
AZOBR_RS19655: AZOBR_RS19655 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,178,920 to 1,179,966
_RS19655
AZOBR_RS19665: AZOBR_RS19665 - LysR family transcripitonal regulator, at 1,181,451 to 1,182,368
_RS19665
AZOBR_RS19670: AZOBR_RS19670 - acyl-CoA dehydrogenase, at 1,182,477 to 1,183,679
_RS19670
AZOBR_RS19675: AZOBR_RS19675 - CoA transferase, at 1,183,841 to 1,185,043
_RS19675
AZOBR_RS19680: AZOBR_RS19680 - membrane protein, at 1,185,302 to 1,186,228
_RS19680
Group
Condition
AZOBR
_RS19655
AZOBR
_RS19665
AZOBR
_RS19670
AZOBR
_RS19675
AZOBR
_RS19680
nitrogen source
L-Lysine (N)
-0.3
-0.7
-0.7
-0.5
+0.0
stress
2-pentyl-furan 1.335528 mM
-0.5
-0.7
-0.3
-0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.5
-0.2
-0.1
-0.7
nitrogen source
L-Lysine (N)
+0.0
-0.6
-0.5
-0.3
-0.2
stress
Cobalt chloride 0.3 mM
-0.1
-0.0
-0.4
+0.1
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.1
-0.5
-0.5
-0.2
stress
1-octen-3-ol 0.6030326667 mM
-0.3
-0.6
-0.3
-0.0
+0.2
lb
LB
-0.5
-0.4
-0.4
+0.3
-0.1
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.4
-1.0
+0.2
-0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.4
-0.3
+0.1
-0.4
motility
outer cut, LB soft agar motility assay
+0.2
-1.1
-0.7
-0.0
+0.8
motility
inner cut, LB soft agar motility assay
-0.1
-1.1
-0.4
+0.3
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.4
-0.2
-0.4
-0.4
nitrogen source
casaminos (N)
+0.2
-0.9
-0.2
-0.1
+0.2
nitrogen source
L-Isoleucine (N)
+0.5
-1.3
+0.1
-0.4
+0.6
stress
2-pentyl-furan 1.780666667 mM
-0.1
+0.4
-0.2
+0.0
-0.5
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.1
-0.3
+0.4
+0.1
-0.4
motility
inner cut, LB soft agar motility assay
-0.3
-0.5
-0.4
+0.3
+0.6
stress
3-octanone 6.3476 mM
-0.4
+0.4
-0.4
+0.2
-0.1
stress
D-Cycloserine 0.125 mg/ml
+0.5
-0.5
-0.5
-0.2
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.5
-0.2
-0.3
-0.2
stress
Paraquat dichloride 0.04 mg/ml
-0.6
+0.6
+0.0
+0.0
-0.1
nitrogen source
nitrate (N)
-0.0
+0.6
-0.0
+0.1
-0.5
stress
2-pentyl-furan 1.780666667 mM
-0.6
+0.3
-0.1
-0.1
+0.7
stress
Sisomicin 0.01 mg/ml
+0.0
+0.7
-0.4
-0.1
+0.1
nitrogen source
L-Glutamic (N)
+0.2
+1.0
-0.2
-0.1
+0.3
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.1
+0.1
+0.7
+0.4
-0.0
motility
inner cut, LB soft agar motility assay
+0.0
+0.7
-0.3
+0.1
+0.8
nitrogen source
L-Phenylalanine (N)
+0.3
+0.4
+0.1
+0.1
+0.4
carbon source
D-Gluconic Acid (C)
+0.2
+0.7
+0.3
+0.0
+0.1
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