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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS19580 and AZOBR_RS19585 are separated by 172 nucleotides
AZOBR_RS19585 and AZOBR_RS19590 are separated by 27 nucleotides
AZOBR_RS19590 and AZOBR_RS19595 are separated by 245 nucleotides
AZOBR_RS19595 and AZOBR_RS19600 are separated by 152 nucleotides
AZOBR_RS19580: AZOBR_RS19580 - AsnC family transcriptional regulator, at 1,163,915 to 1,164,343
_RS19580
AZOBR_RS19585: AZOBR_RS19585 - arginase, at 1,164,516 to 1,165,463
_RS19585
AZOBR_RS19590: AZOBR_RS19590 - ornithine-oxoacid aminotransferase, at 1,165,491 to 1,166,708
_RS19590
AZOBR_RS19595: AZOBR_RS19595 - deacylase, at 1,166,954 to 1,168,069
_RS19595
AZOBR_RS19600: AZOBR_RS19600 - hypothetical protein, at 1,168,222 to 1,168,737
_RS19600
Group
Condition
AZOBR
_RS19580
AZOBR
_RS19585
AZOBR
_RS19590
AZOBR
_RS19595
AZOBR
_RS19600
nitrogen source
L-Citrulline (N)
-3.0
N.D.
-2.0
-0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-2.0
N.D.
-0.3
-0.6
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-3.1
N.D.
-0.4
+0.1
-0.2
nitrogen source
L-Glutamic (N)
-0.7
N.D.
-0.5
-0.8
-0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.6
N.D.
-0.4
-0.8
+0.0
nitrogen source
L-Citrulline (N)
-1.8
N.D.
-0.4
-0.1
-0.3
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-1.5
N.D.
-0.8
-0.5
+0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-1.5
N.D.
+0.3
-0.8
-0.4
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
-1.1
N.D.
-0.4
-0.2
-0.7
stress
1-octen-3-ol 0.6784116667 mM
-0.9
N.D.
-0.4
-0.2
-0.4
stress
1-octen-3-ol 0.7753276667 mM
-1.2
N.D.
-0.2
-0.1
-0.4
stress
Aluminum chloride 5 mM
-0.9
N.D.
-0.1
-0.3
-0.5
stress
2-pentyl-furan 1.335528 mM
-0.1
N.D.
-0.4
+0.1
-1.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.1
N.D.
-0.9
-0.8
-0.1
nitrogen source
L-Serine (N)
-0.9
N.D.
-0.2
+0.2
-0.5
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.4
N.D.
-0.7
+0.4
-0.2
stress
3-octanone 5.2896 mM
-1.1
N.D.
+0.3
+0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
N.D.
-0.1
-0.9
-0.4
stress
3-octanone 6.3476 mM
+0.7
N.D.
+0.8
-0.2
-1.9
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.5
N.D.
-0.6
+0.6
+0.2
nitrogen source
L-Histidine (N)
+0.4
N.D.
-0.5
+0.3
-0.6
nitrogen source
L-Isoleucine (N)
+1.2
N.D.
-1.1
-0.3
+0.1
nitrogen source
nitrate (N)
+0.7
N.D.
-0.4
+0.2
-0.6
stress
1-octen-3-ol 0.6784116667 mM
-0.8
N.D.
-0.0
+0.4
+0.4
stress
2-pentyl-furan 2.671 mM
+0.8
N.D.
-0.8
+0.9
-1.0
nitrogen source
L-Aspartic Acid (N)
+0.9
N.D.
-0.6
+0.1
-0.3
stress
1-octen-3-ol 0.6030326667 mM
+0.3
N.D.
+0.5
+0.1
-0.7
motility
outer cut, LB soft agar motility assay
+0.6
N.D.
-0.6
+1.4
+0.3
stress
Chlorite 1 mM
+1.0
N.D.
+0.7
+0.4
-0.3
motility
inner cut, LB soft agar motility assay
+0.7
N.D.
+1.4
+0.4
-0.4
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