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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS19325 and AZOBR_RS19330 overlap by 4 nucleotides
AZOBR_RS19330 and AZOBR_RS19335 are separated by 159 nucleotides
AZOBR_RS19335 and AZOBR_RS19340 are separated by 55 nucleotides
AZOBR_RS19340 and AZOBR_RS19345 are separated by 64 nucleotides
AZOBR_RS19325: AZOBR_RS19325 - hypothetical protein, at 1,104,284 to 1,105,390
_RS19325
AZOBR_RS19330: AZOBR_RS19330 - NAD synthetase, at 1,105,387 to 1,106,394
_RS19330
AZOBR_RS19335: AZOBR_RS19335 - asparagine synthase, at 1,106,554 to 1,108,506
_RS19335
AZOBR_RS19340: AZOBR_RS19340 - long-chain fatty acid--CoA ligase, at 1,108,562 to 1,110,121
_RS19340
AZOBR_RS19345: AZOBR_RS19345 - acyl carrier protein, at 1,110,186 to 1,110,449
_RS19345
Group
Condition
AZOBR
_RS19325
AZOBR
_RS19330
AZOBR
_RS19335
AZOBR
_RS19340
AZOBR
_RS19345
motility
inner cut, LB soft agar motility assay
-0.4
+0.1
-0.6
-0.1
N.D.
nitrogen source
D-Alanine (N)
-0.2
-0.2
-0.2
-0.3
N.D.
nitrogen source
L-Threonine (N)
-0.5
+0.0
-0.3
-0.2
N.D.
stress
2-pentyl-furan 2.671 mM
-0.4
-0.2
+0.0
-0.3
N.D.
nitrogen source
L-Histidine (N)
-0.6
+0.1
-0.4
-0.0
N.D.
nitrogen source
casaminos (N)
-0.3
-0.1
-0.2
-0.3
N.D.
stress
2-pentyl-furan 1.780666667 mM
+0.0
-0.3
-0.3
-0.1
N.D.
stress
3-octanone 6.3476 mM
-0.3
+0.2
-0.3
+0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.9
+0.1
+0.5
+0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.1
+0.3
-0.0
N.D.
carbon source
succinate (C)
-0.2
+0.2
+0.3
+0.2
N.D.
carbon source
Glycerol (C)
-0.5
+0.5
+0.4
+0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.3
+0.1
+0.4
N.D.
lb
LB
+0.5
+0.1
+0.2
-0.0
N.D.
carbon source
Glycerol (C)
-0.2
+0.5
+0.3
+0.2
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.5
+0.2
+0.2
-0.0
N.D.
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.3
+0.3
+0.2
+0.1
N.D.
nitrogen source
L-Glutamic (N)
+0.2
+0.2
+0.2
+0.2
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
+0.4
+0.1
+0.2
+0.2
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
+0.4
+0.2
+0.2
+0.2
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.6
+0.5
+0.5
N.D.
carbon source
succinate (C)
+0.2
+0.4
+0.4
+0.3
N.D.
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
+0.6
+0.2
+0.3
+0.3
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.6
+0.5
+0.5
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.8
+0.7
+0.7
N.D.
nitrogen source
Cytosine (N)
-0.2
+0.7
+0.7
+0.6
N.D.
carbon source
a-Ketoglutaric (C)
-0.0
+0.9
+0.8
+0.9
N.D.
nitrogen source
L-Isoleucine (N)
-0.1
+0.9
+0.9
+1.0
N.D.
carbon source
a-Ketoglutaric (C)
+0.1
+1.0
+0.8
+0.8
N.D.
nitrogen source
Cytosine (N)
-0.1
+0.9
+1.0
+1.0
N.D.
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