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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS19080 and AZOBR_RS19085 are separated by 98 nucleotides
AZOBR_RS19085 and AZOBR_RS19090 are separated by 161 nucleotides
AZOBR_RS19090 and AZOBR_RS19095 overlap by 4 nucleotides
AZOBR_RS19095 and AZOBR_RS19100 overlap by 11 nucleotides
AZOBR_RS19080: AZOBR_RS19080 - hypothetical protein, at 1,050,520 to 1,051,191
_RS19080
AZOBR_RS19085: AZOBR_RS19085 - glycolate oxidase, at 1,051,290 to 1,052,378
_RS19085
AZOBR_RS19090: AZOBR_RS19090 - iron ABC transporter ATP-binding protein, at 1,052,540 to 1,053,298
_RS19090
AZOBR_RS19095: AZOBR_RS19095 - enterobactin ABC transporter permease, at 1,053,295 to 1,054,278
_RS19095
AZOBR_RS19100: AZOBR_RS19100 - iron ABC transporter permease, at 1,054,268 to 1,055,239
_RS19100
Group
Condition
AZOBR
_RS19080
AZOBR
_RS19085
AZOBR
_RS19090
AZOBR
_RS19095
AZOBR
_RS19100
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.4
-0.1
-0.1
-0.4
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-1.4
-0.2
-0.0
-0.5
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.9
+0.3
-0.2
+0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.2
-1.1
+0.1
N.D.
nitrogen source
Cytosine (N)
-0.5
-0.2
+0.0
-0.7
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.4
-0.6
+0.3
+0.7
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
-0.9
+0.2
+0.1
-0.3
N.D.
stress
Sisomicin 0.01 mg/ml
-0.8
+0.3
-0.1
-0.3
N.D.
stress
Chlorite 1 mM
-0.7
+0.3
+0.1
-0.6
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.6
-0.2
-0.2
N.D.
motility
outer cut, LB soft agar motility assay
-0.6
-0.4
+0.4
-0.1
N.D.
lb
LB
-0.7
+0.1
+0.3
-0.4
N.D.
carbon source
pyruvate (C)
+0.4
-0.4
-0.0
-0.5
N.D.
stress
3-octanone 6.3476 mM
-0.5
+0.2
+0.4
-0.6
N.D.
nitrogen source
Glucuronamide (N)
-0.5
-0.1
+0.4
-0.3
N.D.
nitrogen source
L-Glutamic (N)
-0.6
-0.2
+0.5
-0.0
N.D.
nitrogen source
L-Histidine (N)
-0.3
+0.2
-0.5
+0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.4
-0.3
+0.6
N.D.
stress
Paraquat dichloride 0.04 mg/ml
-0.6
+0.2
-0.2
+0.4
N.D.
stress
2-pentyl-furan 1.780666667 mM
+0.6
-0.2
+0.2
-0.7
N.D.
nitrogen source
L-Isoleucine (N)
-1.3
+0.1
+0.4
+0.6
N.D.
motility
inner cut, LB soft agar motility assay
-0.3
-0.4
+0.7
-0.1
N.D.
stress
2-Furfuraldehyde 0.2 vol%
-0.7
-0.0
-0.0
+0.8
N.D.
stress
2-pentyl-furan 1.335528 mM
+0.3
-0.3
+0.4
-0.4
N.D.
stress
2-pentyl-furan 1.780666667 mM
+0.9
-0.4
-0.6
+0.1
N.D.
stress
D-Cycloserine 0.125 mg/ml
-0.1
+0.2
+0.5
-0.4
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+0.2
+0.4
-0.8
N.D.
stress
3-octanone 6.3476 mM
+0.7
+0.1
+0.4
-0.7
N.D.
stress
2-pentyl-furan 1.335528 mM
+0.5
+0.3
+0.1
-0.5
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.7
+0.2
-0.2
-0.2
N.D.
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AZOBR_RS19085
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AZOBR_RS19090
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