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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS18845 and AZOBR_RS18850 are separated by 184 nucleotides
AZOBR_RS18850 and AZOBR_RS18855 are separated by 209 nucleotides
AZOBR_RS18855 and AZOBR_RS18860 overlap by 4 nucleotides
AZOBR_RS18860 and AZOBR_RS18865 are separated by 112 nucleotides
AZOBR_RS18845: AZOBR_RS18845 - 3'-5' exonuclease, at 999,589 to 1,000,215
_RS18845
AZOBR_RS18850: AZOBR_RS18850 - arabinose 5-phosphate isomerase, at 1,000,400 to 1,001,428
_RS18850
AZOBR_RS18855: AZOBR_RS18855 - hypothetical protein, at 1,001,638 to 1,002,192
_RS18855
AZOBR_RS18860: AZOBR_RS18860 - hypothetical protein, at 1,002,189 to 1,003,088
_RS18860
AZOBR_RS18865: AZOBR_RS18865 - ABC transporter ATP-binding protein, at 1,003,201 to 1,003,932
_RS18865
Group
Condition
AZOBR
_RS18845
AZOBR
_RS18850
AZOBR
_RS18855
AZOBR
_RS18860
AZOBR
_RS18865
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
N.D.
-6.7
N.D.
N.D.
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
N.D.
-4.1
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-3.9
N.D.
N.D.
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
N.D.
-3.8
N.D.
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
N.D.
-3.8
N.D.
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
N.D.
-3.5
N.D.
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
N.D.
-3.3
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-2.9
N.D.
N.D.
N.D.
stress
1-octen-3-ol 0.6030326667 mM
N.D.
-2.5
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
N.D.
-2.4
N.D.
N.D.
N.D.
stress
3-octanone 6.3476 mM
N.D.
-2.4
N.D.
N.D.
N.D.
stress
2-pentyl-furan 1.335528 mM
N.D.
-2.4
N.D.
N.D.
N.D.
stress
3-octanone 5.2896 mM
N.D.
-2.4
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
N.D.
-2.4
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
N.D.
-2.4
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
N.D.
-2.3
N.D.
N.D.
N.D.
stress
2-pentyl-furan 1.780666667 mM
N.D.
-2.3
N.D.
N.D.
N.D.
stress
3-octanone 6.3476 mM
N.D.
-2.3
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
N.D.
-2.3
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
N.D.
-2.3
N.D.
N.D.
N.D.
stress
1-octen-3-ol 0.6030326667 mM
N.D.
-2.3
N.D.
N.D.
N.D.
stress
2-pentyl-furan 1.780666667 mM
N.D.
-2.3
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
N.D.
-2.2
N.D.
N.D.
N.D.
anaerobic; rich media
LB; anaerobic
N.D.
-2.2
N.D.
N.D.
N.D.
stress
2-pentyl-furan 1.780666667 mM
N.D.
-2.2
N.D.
N.D.
N.D.
stress
2-pentyl-furan 1.335528 mM
N.D.
-2.2
N.D.
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
N.D.
-2.2
N.D.
N.D.
N.D.
stress
2-pentyl-furan 2.671 mM
N.D.
-2.1
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-2.1
N.D.
N.D.
N.D.
stress
3-octanone 6.3476 mM
N.D.
-2.0
N.D.
N.D.
N.D.
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