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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS18670 and AZOBR_RS18675 are separated by 190 nucleotides
AZOBR_RS18675 and AZOBR_RS18685 are separated by 1112 nucleotides
AZOBR_RS18685 and AZOBR_RS18690 are separated by 1149 nucleotides
AZOBR_RS18690 and AZOBR_RS18695 are separated by 101 nucleotides
AZOBR_RS18670: AZOBR_RS18670 - guanosine 5'-monophosphate oxidoreductase, at 958,919 to 959,962
_RS18670
AZOBR_RS18675: AZOBR_RS18675 - UDP-galactopyranose mutase, at 960,153 to 961,271
_RS18675
AZOBR_RS18685: AZOBR_RS18685 - L-aspartate oxidase, at 962,384 to 963,793
_RS18685
AZOBR_RS18690: AZOBR_RS18690 - quinolinate synthetase, at 964,943 to 965,953
_RS18690
AZOBR_RS18695: AZOBR_RS18695 - exported protein of unknown function, at 966,055 to 966,417
_RS18695
Group
Condition
AZOBR
_RS18670
AZOBR
_RS18675
AZOBR
_RS18685
AZOBR
_RS18690
AZOBR
_RS18695
nitrogen source
L-Lysine (N)
-0.2
-0.1
-1.1
-1.0
N.D.
carbon source
L-Leucine (C)
-0.3
-0.1
-0.7
-1.3
N.D.
nitrogen source
L-Lysine (N)
-0.1
-0.1
-1.1
-0.8
N.D.
nitrogen source
L-Isoleucine (N)
+0.2
-0.0
-1.6
-0.2
N.D.
stress
Cobalt chloride 0.3 mM
-0.3
-0.1
-1.3
+0.2
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.2
-0.8
-0.7
N.D.
stress
2-pentyl-furan 1.335528 mM
+0.3
-0.3
-0.8
-0.3
N.D.
motility
inner cut, LB soft agar motility assay
+0.2
+0.3
-1.5
+0.4
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.6
+0.4
+0.3
N.D.
stress
2-pentyl-furan 2.671 mM
-0.8
+0.1
+0.6
+0.2
N.D.
stress
3-octanone 6.3476 mM
+0.2
-0.1
+0.9
-0.6
N.D.
motility
outer cut, LB soft agar motility assay
+0.7
+0.1
-1.0
+0.6
N.D.
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.2
+0.3
-0.7
+0.9
N.D.
carbon source
L-Malic (C)
-0.3
-0.1
+0.8
+0.7
N.D.
carbon source
butyrate (C)
-0.2
-0.1
+0.9
+0.8
N.D.
nitrogen source
Cytosine (N)
-0.1
-0.0
+0.9
+0.6
N.D.
nitrogen source
Glucuronamide (N)
-0.2
-0.0
+1.4
+0.3
N.D.
nitrogen source
L-Glutamic (N)
-0.1
+0.1
+1.2
+0.2
N.D.
carbon source
D-Gluconic Acid (C)
-0.4
-0.3
+1.5
+0.8
N.D.
nitrogen source
L-Citrulline (N)
-0.2
+0.0
+0.8
+1.0
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.3
+0.1
+0.6
+0.7
N.D.
nitrogen source
Cytosine (N)
+0.1
+0.0
+1.3
+0.4
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.4
+0.2
+0.7
+0.5
N.D.
nitrogen source
Parabanic Acid (N)
-0.3
+0.1
+1.3
+0.7
N.D.
nitrogen source
L-Phenylalanine (N)
+0.1
+0.0
+1.6
+0.2
N.D.
nitrogen source
L-Threonine (N)
+0.1
+0.1
+1.1
+0.8
N.D.
nitrogen source
Parabanic Acid (N)
+0.1
-0.1
+1.2
+1.0
N.D.
carbon source
Glycerol (C)
-0.3
-0.1
+1.8
+1.4
N.D.
carbon source
D-Gluconic Acid (C)
-0.2
-0.1
+2.2
+1.5
N.D.
carbon source
Glycerol (C)
-0.1
-0.2
+1.9
+2.1
N.D.
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