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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS18500 and AZOBR_RS18505 are separated by 410 nucleotides
AZOBR_RS18505 and AZOBR_RS18510 are separated by 965 nucleotides
AZOBR_RS18510 and AZOBR_RS18515 are separated by 1308 nucleotides
AZOBR_RS18515 and AZOBR_RS18520 are separated by 40 nucleotides
AZOBR_RS18500: AZOBR_RS18500 - hypothetical protein, at 916,713 to 920,411
_RS18500
AZOBR_RS18505: AZOBR_RS18505 - hypothetical protein, at 920,822 to 921,049
_RS18505
AZOBR_RS18510: AZOBR_RS18510 - plasmid replication protein, at 922,015 to 922,944
_RS18510
AZOBR_RS18515: AZOBR_RS18515 - chromosome partitioning protein, at 924,253 to 925,005
_RS18515
AZOBR_RS18520: AZOBR_RS18520 - chromosome partitioning protein, at 925,046 to 925,927
_RS18520
Group
Condition
AZOBR
_RS18500
AZOBR
_RS18505
AZOBR
_RS18510
AZOBR
_RS18515
AZOBR
_RS18520
nitrogen source
L-Leucine (N)
-1.1
N.D.
N.D.
N.D.
N.D.
stress
Sisomicin 0.01 mg/ml
-1.0
N.D.
N.D.
N.D.
N.D.
motility
inner cut, LB soft agar motility assay
-0.9
N.D.
N.D.
N.D.
N.D.
stress
D-Cycloserine 0.125 mg/ml
-0.8
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Leucine (N)
-0.7
N.D.
N.D.
N.D.
N.D.
stress
2-pentyl-furan 1.335528 mM
-0.6
N.D.
N.D.
N.D.
N.D.
stress
2-pentyl-furan 1.780666667 mM
-0.5
N.D.
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
N.D.
N.D.
N.D.
N.D.
stress
benzoic 0.29 mg/ml
-0.5
N.D.
N.D.
N.D.
N.D.
stress
benzoic 0.145 mg/ml
-0.4
N.D.
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
-0.4
N.D.
N.D.
N.D.
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
+0.4
N.D.
N.D.
N.D.
N.D.
stress
Paraquat dichloride 0.02 mg/ml
+0.4
N.D.
N.D.
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.4
N.D.
N.D.
N.D.
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.4
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
N.D.
N.D.
N.D.
N.D.
nitrogen source
Urea (N)
+0.4
N.D.
N.D.
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
+0.4
N.D.
N.D.
N.D.
N.D.
stress
3-octanone 5.2896 mM
+0.4
N.D.
N.D.
N.D.
N.D.
stress
3-octanone 6.3476 mM
+0.5
N.D.
N.D.
N.D.
N.D.
carbon source
L-Proline (C)
+0.5
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
N.D.
N.D.
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.5
N.D.
N.D.
N.D.
N.D.
nitrogen source
casaminos (N)
+0.5
N.D.
N.D.
N.D.
N.D.
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
+0.6
N.D.
N.D.
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
+0.6
N.D.
N.D.
N.D.
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
+0.6
N.D.
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
+0.6
N.D.
N.D.
N.D.
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.9
N.D.
N.D.
N.D.
N.D.
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