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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS18190 and AZOBR_RS18195 overlap by 4 nucleotides
AZOBR_RS18195 and AZOBR_RS18200 are separated by 100 nucleotides
AZOBR_RS18200 and AZOBR_RS18205 are separated by 230 nucleotides
AZOBR_RS18205 and AZOBR_RS18210 are separated by 771 nucleotides
AZOBR_RS18190: AZOBR_RS18190 - hypothetical protein, at 839,592 to 840,293
_RS18190
AZOBR_RS18195: AZOBR_RS18195 - hypothetical protein, at 840,290 to 843,593
_RS18195
AZOBR_RS18200: AZOBR_RS18200 - hypothetical protein, at 843,694 to 846,412
_RS18200
AZOBR_RS18205: AZOBR_RS18205 - outer membrane efflux protein, at 846,643 to 847,959
_RS18205
AZOBR_RS18210: AZOBR_RS18210 - ATP-binding cassette subfamily C (fragment), at 848,731 to 849,657
_RS18210
Group
Condition
AZOBR
_RS18190
AZOBR
_RS18195
AZOBR
_RS18200
AZOBR
_RS18205
AZOBR
_RS18210
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.5
+0.1
N.D.
-1.0
stress
2-pentyl-furan 1.780666667 mM
N.D.
-0.1
-0.8
N.D.
-0.5
stress
Paraquat dichloride 0.04 mg/ml
N.D.
-0.2
-0.5
N.D.
-0.5
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
N.D.
-0.2
-0.4
N.D.
-0.5
stress
2-pentyl-furan 1.780666667 mM
N.D.
-0.0
-0.1
N.D.
-0.9
nitrogen source
L-Leucine (N)
N.D.
-0.7
+0.0
N.D.
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.5
-0.1
N.D.
-0.3
stress
Sisomicin 0.01 mg/ml
N.D.
-0.3
-0.2
N.D.
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.8
+0.1
N.D.
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
+0.2
-0.5
N.D.
-0.4
nitrogen source
L-Threonine (N)
N.D.
-0.5
-0.2
N.D.
+0.2
stress
2-Furfuraldehyde 0.2 vol%
N.D.
+0.1
-0.0
N.D.
-0.7
stress
2-pentyl-furan 2.671 mM
N.D.
-0.4
-0.3
N.D.
+0.2
nitrogen source
L-Isoleucine (N)
N.D.
+0.4
+0.0
N.D.
-0.8
nitrogen source
L-Leucine (N)
N.D.
+0.1
+0.2
N.D.
-0.7
carbon source
L-Malic (C)
N.D.
-0.2
-0.2
N.D.
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.3
+0.6
N.D.
-1.0
stress
Chlorite 1 mM
N.D.
+0.2
+0.2
N.D.
-0.4
stress
D-Cycloserine 0.125 mg/ml
N.D.
-0.0
-0.4
N.D.
+0.3
carbon source
Ethanol (C)
N.D.
+0.1
+0.3
N.D.
-0.4
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
N.D.
+0.2
-0.4
N.D.
+0.2
carbon source
Ethanol (C)
N.D.
-0.3
-0.1
N.D.
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.4
+0.0
N.D.
+0.6
lb no stress control
LB no stress control
N.D.
+0.2
-0.2
N.D.
+0.4
nitrogen source
L-Aspartic Acid (N)
N.D.
+0.2
+0.4
N.D.
-0.2
motility
inner cut, LB soft agar motility assay
N.D.
-0.4
+0.1
N.D.
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.3
-0.1
N.D.
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.2
+0.2
N.D.
+0.7
motility
outer cut, LB soft agar motility assay
N.D.
+0.7
-0.0
N.D.
+0.1
stress
3-octanone 6.3476 mM
N.D.
-0.0
+0.3
N.D.
+0.5
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