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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS18165 and AZOBR_RS18170 are separated by 130 nucleotides
AZOBR_RS18170 and AZOBR_RS18175 are separated by 257 nucleotides
AZOBR_RS18175 and AZOBR_RS18180 are separated by 4 nucleotides
AZOBR_RS18180 and AZOBR_RS18185 are separated by 60 nucleotides
AZOBR_RS18165: AZOBR_RS18165 - 2 5-dioxovalerate dehydrogenase, at 833,059 to 834,639
_RS18165
AZOBR_RS18170: AZOBR_RS18170 - sugar ABC transporter, at 834,770 to 836,005
_RS18170
AZOBR_RS18175: AZOBR_RS18175 - sugar ABC transporter, at 836,263 to 837,150
_RS18175
AZOBR_RS18180: AZOBR_RS18180 - sugar ABC transporter, at 837,155 to 837,976
_RS18180
AZOBR_RS18185: AZOBR_RS18185 - sugar ABC transporter, at 838,037 to 839,191
_RS18185
Group
Condition
AZOBR
_RS18165
AZOBR
_RS18170
AZOBR
_RS18175
AZOBR
_RS18180
AZOBR
_RS18185
nitrogen source
L-Isoleucine (N)
-6.5
-0.7
-0.1
-0.2
+0.0
stress
2-pentyl-furan 1.335528 mM
-7.2
-0.2
+0.1
-0.1
+0.1
stress
2-pentyl-furan 1.780666667 mM
-5.5
-0.5
-0.0
-0.7
+0.2
stress
2-pentyl-furan 1.335528 mM
-6.9
+0.2
-0.0
+0.5
-0.0
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-5.2
+0.0
-0.4
-0.5
+0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-5.2
+0.2
-0.0
-0.2
+0.0
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-5.2
+0.2
-0.2
+0.1
+0.2
nitrogen source
Parabanic Acid (N)
-4.5
-0.0
-0.0
+0.2
+0.1
nitrogen source
Parabanic Acid (N)
-4.1
-0.1
-0.0
+0.2
+0.1
motility
outer cut, LB soft agar motility assay
-2.3
-0.3
-1.0
-0.2
+0.0
carbon source
D-Fructose (C)
-3.2
-0.1
-0.1
+0.0
-0.0
stress
2-pentyl-furan 1.780666667 mM
-3.4
+0.0
+0.1
-0.1
+0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-2.8
+0.0
-0.2
-0.4
+0.2
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
-3.4
+0.2
-0.1
-0.0
+0.1
carbon source
a-Ketoglutaric (C)
-2.6
-0.1
-0.4
-0.1
-0.1
nitrogen source
Cytosine (N)
-3.4
+0.1
-0.2
+0.3
-0.1
stress
2-pentyl-furan 1.335528 mM
-3.8
-0.0
+0.1
+0.3
+0.1
carbon source
D-Gluconic Acid (C)
-3.1
-0.1
-0.1
+0.1
+0.3
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-3.1
+0.2
-0.2
+0.1
+0.1
stress
2-pentyl-furan 1.780666667 mM
-2.8
-0.2
-0.4
+0.3
+0.4
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-2.6
+0.2
+0.0
-0.1
+0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-2.4
+0.4
-0.1
-0.0
+0.0
motility
inner cut, LB soft agar motility assay
+1.6
-0.6
-0.2
-1.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.9
+0.2
-1.3
+0.8
-0.4
motility
inner cut, LB soft agar motility assay
+2.1
-0.0
-0.3
-0.8
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+2.0
+0.3
+0.2
+0.1
+0.2
motility
inner cut, LB soft agar motility assay
+2.7
-0.1
-0.2
+0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+2.2
+0.3
-0.1
+0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.5
+0.3
+0.3
+0.5
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+2.3
+0.2
-0.1
+0.8
+0.2
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