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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS18150 and AZOBR_RS18155 are separated by 61 nucleotides
AZOBR_RS18155 and AZOBR_RS18160 are separated by 70 nucleotides
AZOBR_RS18160 and AZOBR_RS18165 are separated by 46 nucleotides
AZOBR_RS18165 and AZOBR_RS18170 are separated by 130 nucleotides
AZOBR_RS18150: AZOBR_RS18150 - membrane protein, at 829,837 to 830,988
_RS18150
AZOBR_RS18155: AZOBR_RS18155 - enoyl-CoA hydratase, at 831,050 to 831,796
_RS18155
AZOBR_RS18160: AZOBR_RS18160 - fumarylacetoacetate hydrolase, at 831,867 to 833,012
_RS18160
AZOBR_RS18165: AZOBR_RS18165 - 2 5-dioxovalerate dehydrogenase, at 833,059 to 834,639
_RS18165
AZOBR_RS18170: AZOBR_RS18170 - sugar ABC transporter, at 834,770 to 836,005
_RS18170
Group
Condition
AZOBR
_RS18150
AZOBR
_RS18155
AZOBR
_RS18160
AZOBR
_RS18165
AZOBR
_RS18170
stress
2-pentyl-furan 1.335528 mM
-0.4
-0.3
-0.7
-6.9
+0.2
nitrogen source
L-Isoleucine (N)
-0.3
+0.3
-0.5
-6.5
-0.7
stress
2-pentyl-furan 1.335528 mM
+0.3
-0.3
+0.4
-7.2
-0.2
stress
2-pentyl-furan 1.780666667 mM
+0.2
-0.2
+0.0
-5.5
-0.5
nitrogen source
Parabanic Acid (N)
-0.1
-0.3
-0.8
-4.5
-0.0
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.5
+0.0
+0.1
-5.2
+0.0
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.1
-0.1
+0.1
-5.2
+0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.3
+0.0
+0.3
-5.2
+0.2
stress
2-pentyl-furan 1.335528 mM
+0.3
-0.6
-0.4
-3.8
-0.0
nitrogen source
Cytosine (N)
-0.2
+0.2
-0.7
-3.4
+0.1
stress
2-pentyl-furan 1.780666667 mM
+0.0
+0.1
-0.5
-3.4
+0.0
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.2
-0.1
-0.5
-2.8
+0.0
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.2
-0.1
-0.4
-3.1
+0.2
carbon source
D-Fructose (C)
-0.0
+0.0
-0.2
-3.2
-0.1
nitrogen source
Parabanic Acid (N)
+0.0
+0.2
+0.7
-4.1
-0.1
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
-0.3
+0.1
+0.4
-3.4
+0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.3
+0.1
-0.5
-2.4
+0.4
stress
2-pentyl-furan 1.780666667 mM
+0.4
+0.2
-0.3
-2.8
-0.2
carbon source
a-Ketoglutaric (C)
+0.1
+0.2
-0.3
-2.6
-0.1
motility
outer cut, LB soft agar motility assay
-0.8
+1.1
-0.2
-2.3
-0.3
carbon source
D-Gluconic Acid (C)
+0.1
+0.9
-0.2
-3.1
-0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.4
+0.2
+0.4
-2.6
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.8
-1.8
+1.5
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.3
-1.8
+2.2
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.4
-0.4
+2.2
+0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.7
+0.7
-0.7
+1.4
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.4
+0.3
+2.3
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.0
-0.5
+2.0
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+1.2
-0.8
+1.5
+0.3
motility
inner cut, LB soft agar motility assay
+0.1
-0.5
+1.6
+2.7
-0.1
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