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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS18135 and AZOBR_RS18145 are separated by 1167 nucleotides
AZOBR_RS18145 and AZOBR_RS18150 overlap by 19 nucleotides
AZOBR_RS18150 and AZOBR_RS18155 are separated by 61 nucleotides
AZOBR_RS18155 and AZOBR_RS18160 are separated by 70 nucleotides
AZOBR_RS18135: AZOBR_RS18135 - LacI family transcription regulator, at 826,379 to 827,440
_RS18135
AZOBR_RS18145: AZOBR_RS18145 - racemase, at 828,608 to 829,855
_RS18145
AZOBR_RS18150: AZOBR_RS18150 - membrane protein, at 829,837 to 830,988
_RS18150
AZOBR_RS18155: AZOBR_RS18155 - enoyl-CoA hydratase, at 831,050 to 831,796
_RS18155
AZOBR_RS18160: AZOBR_RS18160 - fumarylacetoacetate hydrolase, at 831,867 to 833,012
_RS18160
Group
Condition
AZOBR
_RS18135
AZOBR
_RS18145
AZOBR
_RS18150
AZOBR
_RS18155
AZOBR
_RS18160
motility
outer cut, LB soft agar motility assay
-4.2
+0.1
-0.8
+1.1
-0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-3.0
+0.3
-0.3
-0.1
-0.6
nitrogen source
L-Phenylalanine (N)
-1.9
+0.1
-0.1
-0.1
-1.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.1
-0.2
+0.4
+0.3
-1.8
carbon source
D-Gluconic Acid (C)
-4.3
+0.0
-0.1
+1.1
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
-0.0
-0.0
+0.1
-0.3
-2.6
nitrogen source
L-Isoleucine (N)
-2.5
+0.0
-0.3
+0.3
-0.5
nitrogen source
L-Citrulline (N)
-1.9
-0.1
-0.2
-0.3
-0.4
stress
benzoic 0.29 mg/ml
-1.4
-0.0
-0.4
-0.1
-0.7
carbon source
butyrate (C)
-2.4
+0.1
+0.1
-0.2
-0.1
stress
2-pentyl-furan 1.335528 mM
-1.4
-0.1
+0.3
-0.6
-0.4
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
-0.4
-0.2
+0.2
-0.4
-1.3
stress
3-octanone 4.2317 mM
+0.3
-0.1
-0.1
-0.5
-1.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.6
-0.2
+0.6
+0.0
-0.5
nitrogen source
L-Threonine (N)
-1.7
+0.1
+0.4
+0.3
-0.9
lb
LB
-1.9
-0.0
-0.6
-0.0
+0.9
nitrogen source
L-Glutamic (N)
-2.4
+0.4
-0.3
+0.1
+0.7
motility
inner cut, LB soft agar motility assay
-1.5
+0.1
-0.4
+0.3
+0.3
stress
3-octanone 6.3476 mM
+0.0
+0.0
-0.6
-1.2
+0.7
nitrogen source
L-Histidine (N)
-0.2
+0.3
+0.4
+0.1
-1.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.4
+0.6
+0.8
-1.8
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-1.1
-0.3
+0.7
+0.7
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.3
+0.0
+0.4
+1.2
-0.8
stress
Cobalt chloride 0.2 mM
+1.1
+0.0
-0.6
+0.1
-0.8
stress
Paraquat dichloride 0.02 mg/ml
-1.0
+0.2
+0.3
-0.1
+0.9
motility
inner cut, LB soft agar motility assay
-0.6
+0.0
+0.1
-0.5
+1.6
stress
2-Furfuraldehyde 0.2 vol%
+0.4
+0.3
-0.6
-0.3
+1.0
carbon source
Glycerol (C)
+1.6
+0.2
+0.2
+0.4
-0.7
carbon source
a-Ketoglutaric (C)
+3.8
-0.4
+0.1
+0.2
-0.3
carbon source
a-Ketoglutaric (C)
+3.6
+0.1
+0.0
-0.1
-0.0
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