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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS17950 and AZOBR_RS17955 are separated by 4 nucleotides
AZOBR_RS17955 and AZOBR_RS17960 overlap by 13 nucleotides
AZOBR_RS17960 and AZOBR_RS17965 are separated by 169 nucleotides
AZOBR_RS17965 and AZOBR_RS17970 are separated by 171 nucleotides
AZOBR_RS17950: AZOBR_RS17950 - iron ABC transporter, at 784,499 to 786,475
_RS17950
AZOBR_RS17955: AZOBR_RS17955 - amino acid ABC transporter substrate-binding protein, at 786,480 to 787,385
_RS17955
AZOBR_RS17960: AZOBR_RS17960 - iron-hydroxamate transporter ATP-binding protein, at 787,373 to 788,164
_RS17960
AZOBR_RS17965: AZOBR_RS17965 - ferrichrome receptor, at 788,334 to 790,487
_RS17965
AZOBR_RS17970: AZOBR_RS17970 - AraC family transcriptional regulator, at 790,659 to 791,543
_RS17970
Group
Condition
AZOBR
_RS17950
AZOBR
_RS17955
AZOBR
_RS17960
AZOBR
_RS17965
AZOBR
_RS17970
motility
inner cut, LB soft agar motility assay
-0.7
-0.4
-0.7
-0.1
-0.9
stress
Benzethonium chloride 0.003 mM
-0.4
-0.2
-0.8
+0.0
-0.1
stress
Cobalt chloride 0.2 mM
-0.3
-0.3
-0.3
-0.1
-0.3
stress
3-octanone 6.3476 mM
-0.5
-0.1
-0.3
-0.2
-0.0
carbon source
D-Gluconic Acid (C)
-0.2
-0.1
-0.7
-0.1
-0.0
nitrogen source
L-Glutamic (N)
-0.1
-0.2
-0.2
-0.1
-0.6
stress
2-pentyl-furan 1.780666667 mM
-0.4
+0.2
+0.1
+0.0
-0.9
stress
3-octanone 5.2896 mM
-0.4
-0.1
+0.0
-0.1
-0.3
stress
1-octen-3-ol 0.7753276667 mM
-0.3
-0.0
-0.3
+0.0
-0.3
nitrogen source
Glucuronamide (N)
-0.5
-0.0
-0.3
-0.0
+0.1
dmso control
DMSO control
-0.4
-0.1
+0.0
+0.1
-0.4
stress
Sisomicin 0.01 mg/ml
-0.4
+0.3
-0.3
-0.1
-0.2
stress
2-pentyl-furan 1.780666667 mM
+0.2
+0.0
-0.4
-0.2
-0.2
stress
1-octen-3-ol 0.6030326667 mM
+0.1
+0.0
+0.1
-0.0
-0.7
nitrogen source
casaminos (N)
+0.4
-0.1
-0.7
+0.1
-0.1
stress
Paraquat dichloride 0.02 mg/ml
-0.3
-0.2
+0.4
-0.1
-0.2
nitrogen source
nitrate (N)
-0.7
-0.0
+0.0
+0.1
+0.3
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.4
+0.1
+0.2
+0.1
-0.3
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.2
+0.1
+0.2
+0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.1
+0.3
+0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.2
-0.2
+0.3
+0.3
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.5
+0.3
+0.2
+0.0
+0.0
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-0.4
+0.1
-0.1
+0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.1
-0.1
+0.3
-0.2
motility
outer cut, LB soft agar motility assay
+0.1
-0.3
+0.4
-0.1
+0.2
stress
3-octanone 6.3476 mM
+0.3
-0.1
+0.3
-0.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.4
+0.4
-0.2
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
+0.1
-0.2
-0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.3
+0.3
-0.1
+0.6
nitrogen source
L-Isoleucine (N)
+1.0
+0.2
-0.3
+0.2
+0.4
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