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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS16505 and AZOBR_RS16510 are separated by 135 nucleotides
AZOBR_RS16510 and AZOBR_RS16515 are separated by 7 nucleotides
AZOBR_RS16515 and AZOBR_RS16520 are separated by 130 nucleotides
AZOBR_RS16520 and AZOBR_RS16525 are separated by 210 nucleotides
AZOBR_RS16505: AZOBR_RS16505 - hypothetical protein, at 453,661 to 454,647
_RS16505
AZOBR_RS16510: AZOBR_RS16510 - S-formylglutathione hydrolase, at 454,783 to 455,646
_RS16510
AZOBR_RS16515: AZOBR_RS16515 - S-(hydroxymethyl)glutathione dehydrogenase, at 455,654 to 456,772
_RS16515
AZOBR_RS16520: AZOBR_RS16520 - LysR family transcriptional regulator, at 456,903 to 457,820
_RS16520
AZOBR_RS16525: AZOBR_RS16525 - hypothetical protein, at 458,031 to 458,855
_RS16525
Group
Condition
AZOBR
_RS16505
AZOBR
_RS16510
AZOBR
_RS16515
AZOBR
_RS16520
AZOBR
_RS16525
stress
3-octanone 6.3476 mM
-1.5
-0.1
+0.0
+0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.3
-0.4
+0.0
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.2
-0.7
-0.4
-0.1
stress
2-pentyl-furan 1.335528 mM
-0.6
+0.2
-0.3
-0.3
-0.0
anaerobic; rich media
LB; anaerobic
-0.8
-0.4
+0.1
-0.0
-0.0
stress
2-pentyl-furan 1.780666667 mM
-0.1
-0.3
-0.4
+0.1
-0.1
carbon source
D,L-Lactate (C)
-0.3
-0.2
+0.1
-0.3
-0.3
stress
3-octanone 5.2896 mM
-0.7
+0.2
-0.3
+0.1
-0.2
stress
3-octanone 6.3476 mM
-1.3
+0.1
+0.4
-0.0
+0.1
stress
2-pentyl-furan 1.780666667 mM
-0.6
-0.3
-0.0
+0.1
+0.1
stress
3-octanone 6.3476 mM
-0.9
+0.3
-0.1
+0.1
-0.0
stress
2-pentyl-furan 1.780666667 mM
-0.6
-0.2
+0.1
-0.2
+0.4
nitrogen source
L-Phenylalanine (N)
+0.1
-0.4
-0.4
+0.1
+0.2
lb
LB
-0.2
-0.3
+0.3
-0.1
-0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.4
-0.3
+0.1
+0.3
-0.1
lb
LB
-0.0
+0.2
-0.4
+0.2
-0.2
carbon source
D-Gluconic Acid (C)
+0.5
-0.3
-0.4
-0.0
-0.1
stress
2-pentyl-furan 2.671 mM
-0.4
+0.3
-0.0
+0.2
-0.2
stress
3-octanone 6.3476 mM
-0.6
+0.3
+0.2
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.6
-0.2
+0.1
-0.3
-0.2
carbon source
D,L-Lactate (C)
+0.1
-0.2
-0.3
+0.4
+0.1
nitrogen source
L-Threonine (N)
-0.1
+0.3
-0.4
+0.2
+0.0
carbon source
D-Gluconic Acid (C)
+0.6
-0.1
+0.0
-0.4
-0.0
nitrogen source
L-Histidine (N)
-0.3
+0.0
-0.2
+0.3
+0.2
lb no stress control
LB no stress control
-0.4
+0.2
-0.1
+0.3
+0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.2
-0.2
+0.3
+0.3
-0.0
lb
LB
-0.3
+0.3
-0.1
+0.2
+0.1
stress
3-octanone 4.2317 mM
-0.3
+0.2
+0.2
+0.4
-0.1
stress
Paraquat dichloride 0.04 mg/ml
-0.4
+0.2
+0.6
+0.3
-0.2
nitrogen source
Glucuronamide (N)
+0.1
+0.3
-0.3
+0.4
+0.2
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