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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS16405 and AZOBR_RS16410 are separated by 184 nucleotides
AZOBR_RS16410 and AZOBR_RS16415 are separated by 613 nucleotides
AZOBR_RS16415 and AZOBR_RS16420 are separated by 63 nucleotides
AZOBR_RS16420 and AZOBR_RS16425 are separated by 217 nucleotides
AZOBR_RS16405: AZOBR_RS16405 - hypothetical protein, at 429,453 to 430,568
_RS16405
AZOBR_RS16410: AZOBR_RS16410 - hypothetical protein, at 430,753 to 430,941
_RS16410
AZOBR_RS16415: AZOBR_RS16415 - hypothetical protein, at 431,555 to 432,139
_RS16415
AZOBR_RS16420: AZOBR_RS16420 - excinuclease ABC subunit B, at 432,203 to 434,341
_RS16420
AZOBR_RS16425: AZOBR_RS16425 - branched-chain amino acid aminotransferase, at 434,559 to 435,431
_RS16425
Group
Condition
AZOBR
_RS16405
AZOBR
_RS16410
AZOBR
_RS16415
AZOBR
_RS16420
AZOBR
_RS16425
stress
Sisomicin 0.01 mg/ml
-1.2
-0.1
-0.8
-0.9
-0.0
stress
Cobalt chloride 0.2 mM
-1.4
-0.3
-0.5
-0.8
-0.1
nitrogen source
L-Isoleucine (N)
-0.2
-0.4
-1.0
-0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
-0.0
+0.0
-0.9
-0.4
stress
Cobalt chloride 0.3 mM
-0.8
-0.1
+0.1
-1.0
-0.0
lb
LB
+0.5
-0.0
-0.9
-0.9
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.0
+0.0
+0.4
-0.7
-0.5
motility
inner cut, LB soft agar motility assay
+0.0
+0.0
-1.1
-0.7
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.9
-0.0
+0.8
-1.0
-0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.4
+0.2
-0.7
-0.3
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.2
+0.0
-1.0
-0.3
stress
D-Cycloserine 0.125 mg/ml
+0.1
-0.0
-0.1
-1.6
+0.4
carbon source
D-Fructose (C)
-1.0
-0.2
+0.3
-0.2
-0.0
stress
2-pentyl-furan 1.780666667 mM
-1.5
+0.3
+0.6
-0.7
+0.4
stress
2-pentyl-furan 2.671 mM
+0.3
+0.3
+0.1
-0.4
-0.7
motility
inner cut, LB soft agar motility assay
-0.3
+0.3
+0.4
-0.6
-0.2
stress
2-pentyl-furan 1.780666667 mM
-0.3
-0.4
+0.6
-0.3
+0.2
stress
2-pentyl-furan 1.335528 mM
-0.3
+0.2
+0.7
-0.4
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+0.2
-0.1
-0.7
-0.1
stress
Paraquat dichloride 0.02 mg/ml
+0.6
-0.1
+0.5
-0.4
-0.4
stress
Paraquat dichloride 0.04 mg/ml
+0.6
-0.1
+0.5
-0.3
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
+0.6
+0.1
+0.5
-0.4
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
-0.2
+0.9
-0.9
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
-0.0
+0.9
-0.9
-0.1
stress
2-pentyl-furan 1.335528 mM
-0.3
-0.1
+1.4
-0.4
-0.1
motility
inner cut, LB soft agar motility assay
+0.5
-0.3
+0.9
-0.6
+0.3
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
+0.8
-0.1
+0.6
-0.2
-0.2
stress
3-octanone 5.2896 mM
+0.9
+0.1
+0.4
-0.2
-0.2
lb no stress control
LB no stress control
+0.4
+0.1
+1.0
-0.2
+0.0
stress
3-octanone 6.3476 mM
+0.9
+0.1
+0.6
-0.2
+0.3
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