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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS16245 and AZOBR_RS16250 are separated by 75 nucleotides
AZOBR_RS16250 and AZOBR_RS16255 are separated by 72 nucleotides
AZOBR_RS16255 and AZOBR_RS16260 are separated by 40 nucleotides
AZOBR_RS16260 and AZOBR_RS16265 are separated by 77 nucleotides
AZOBR_RS16245: AZOBR_RS16245 - metal-chelation protein CHAD, at 395,821 to 397,419
_RS16245
AZOBR_RS16250: AZOBR_RS16250 - LysR family transcriptional regulator, at 397,495 to 398,409
_RS16250
AZOBR_RS16255: AZOBR_RS16255 - membrane protein, at 398,482 to 398,964
_RS16255
AZOBR_RS16260: AZOBR_RS16260 - azoreductase, at 399,005 to 399,604
_RS16260
AZOBR_RS16265: AZOBR_RS16265 - 3-oxoacyl-ACP reductase, at 399,682 to 400,461
_RS16265
Group
Condition
AZOBR
_RS16245
AZOBR
_RS16250
AZOBR
_RS16255
AZOBR
_RS16260
AZOBR
_RS16265
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.5
-0.1
-0.3
-0.5
N.D.
motility
outer cut, LB soft agar motility assay
+0.5
-1.9
-0.3
+0.4
N.D.
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.8
-0.4
+0.1
-0.3
N.D.
carbon source
D-Gluconic Acid (C)
-0.3
-0.5
+0.2
-0.5
N.D.
stress
3-octanone 6.3476 mM
-0.5
-0.5
-0.6
+0.4
N.D.
nitrogen source
casaminos (N)
-0.4
-0.9
+0.2
-0.1
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.4
+0.3
-0.5
-0.4
N.D.
lb
LB
-0.6
+0.2
-0.5
+0.2
N.D.
stress
3-octanone 6.3476 mM
+0.3
-0.1
-0.9
+0.1
N.D.
stress
1-octen-3-ol 0.7753276667 mM
+0.3
-0.2
-0.9
+0.2
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
+0.3
-0.9
-0.1
+0.2
N.D.
stress
3-octanone 6.3476 mM
+0.3
-0.6
-0.5
+0.3
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
+0.0
+0.8
-0.5
N.D.
stress
Paraquat dichloride 0.04 mg/ml
+0.6
-0.9
-0.3
+0.4
N.D.
stress
1-octen-3-ol 0.6030326667 mM
+0.3
-0.6
-0.2
+0.3
N.D.
stress
Sisomicin 0.01 mg/ml
-0.6
-0.5
+0.8
+0.1
N.D.
stress
2-Furfuraldehyde 0.2 vol%
+0.5
-0.4
-0.3
+0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.6
+0.6
+0.1
N.D.
stress
Paraquat dichloride 0.02 mg/ml
-0.1
-0.5
+0.3
+0.6
N.D.
stress
3-octanone 6.3476 mM
+0.2
-0.0
-0.6
+0.7
N.D.
stress
Bacitracin 0.25 mg/ml
+0.1
-0.6
+0.2
+0.6
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.4
+0.7
+0.3
-0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.9
+0.1
+0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.9
+0.2
-0.5
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
+1.0
+0.3
+0.2
N.D.
stress
2-pentyl-furan 1.335528 mM
+0.3
-0.0
+0.4
+0.6
N.D.
motility
inner cut, LB soft agar motility assay
+0.2
-0.3
+0.8
+0.7
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.6
-0.5
+1.1
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+1.2
-0.7
+0.7
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+1.3
+0.1
+0.6
N.D.
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