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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS16205 and AZOBR_RS16210 are separated by 163 nucleotides
AZOBR_RS16210 and AZOBR_RS16215 are separated by 112 nucleotides
AZOBR_RS16215 and AZOBR_RS16220 are separated by 166 nucleotides
AZOBR_RS16220 and AZOBR_RS16225 are separated by 264 nucleotides
AZOBR_RS16205: AZOBR_RS16205 - hypothetical protein, at 385,020 to 385,910
_RS16205
AZOBR_RS16210: AZOBR_RS16210 - hypothetical protein, at 386,074 to 386,292
_RS16210
AZOBR_RS16215: AZOBR_RS16215 - aspartyl-tRNA synthetase, at 386,405 to 388,234
_RS16215
AZOBR_RS16220: AZOBR_RS16220 - ribonuclease D, at 388,401 to 389,567
_RS16220
AZOBR_RS16225: AZOBR_RS16225 - hypothetical protein, at 389,832 to 391,121
_RS16225
Group
Condition
AZOBR
_RS16205
AZOBR
_RS16210
AZOBR
_RS16215
AZOBR
_RS16220
AZOBR
_RS16225
carbon source
D-Gluconic Acid (C)
-2.2
-0.8
N.D.
-1.1
-0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-2.5
-0.8
N.D.
-1.0
+0.0
nitrogen source
L-Threonine (N)
-2.9
-0.2
N.D.
-0.2
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-3.5
+0.4
N.D.
-0.1
+0.0
nitrogen source
L-Glutamic (N)
-0.9
+0.1
N.D.
-2.3
+0.2
nitrogen source
casaminos (N)
-2.1
-0.2
N.D.
-0.1
-0.4
stress
2-pentyl-furan 2.671 mM
-1.9
-0.2
N.D.
-0.3
-0.5
stress
Paraquat dichloride 0.04 mg/ml
-1.8
+0.4
N.D.
-1.3
+0.2
stress
Benzethonium chloride 0.003 mM
-1.2
-0.9
N.D.
-0.1
-0.1
stress
2-pentyl-furan 1.335528 mM
-1.0
-0.2
N.D.
-0.6
-0.3
nitrogen source
L-Isoleucine (N)
-0.8
-0.5
N.D.
-0.7
-0.1
nitrogen source
Glucuronamide (N)
-1.6
+0.0
N.D.
-0.3
-0.1
carbon source
L-Leucine (C)
-1.2
-0.0
N.D.
-0.5
-0.2
stress
Paraquat dichloride 0.02 mg/ml
-1.0
-0.1
N.D.
-0.5
-0.3
nitrogen source
Cytosine (N)
-1.4
+0.2
N.D.
-0.5
-0.2
nitrogen source
D-Alanine (N)
-1.6
+0.1
N.D.
-0.2
-0.3
stress
2-pentyl-furan 1.780666667 mM
-1.5
+0.3
N.D.
-0.1
-0.5
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-1.0
+0.7
N.D.
-0.7
-0.7
nitrogen source
L-Leucine (N)
-0.6
+0.2
N.D.
-0.9
-0.3
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-1.1
+0.3
N.D.
+0.4
-0.2
nitrogen source
L-Leucine (N)
-0.8
+0.2
N.D.
+0.7
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.5
N.D.
-1.0
+0.4
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.7
+0.3
N.D.
+0.9
-0.5
motility
inner cut, LB soft agar motility assay
-0.5
-0.4
N.D.
+1.2
+0.3
motility
inner cut, LB soft agar motility assay
+0.4
-0.5
N.D.
+0.3
+0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.8
N.D.
+0.1
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+0.6
N.D.
-0.4
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.4
+0.1
N.D.
-0.1
+1.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.3
+0.2
N.D.
+0.8
+0.6
motility
outer cut, LB soft agar motility assay
+0.3
+0.2
N.D.
+0.6
+1.9
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