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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS15545 and AZOBR_RS15550 are separated by 205 nucleotides
AZOBR_RS15550 and AZOBR_RS15555 are separated by 143 nucleotides
AZOBR_RS15555 and AZOBR_RS15560 are separated by 26 nucleotides
AZOBR_RS15560 and AZOBR_RS15565 are separated by 2 nucleotides
AZOBR_RS15545: AZOBR_RS15545 - hypothetical protein, at 243,776 to 244,348
_RS15545
AZOBR_RS15550: AZOBR_RS15550 - tRNA-Ser, at 244,554 to 244,643
_RS15550
AZOBR_RS15555: AZOBR_RS15555 - transcriptional regulator, at 244,787 to 245,683
_RS15555
AZOBR_RS15560: AZOBR_RS15560 - isopropylmalate isomerase, at 245,710 to 246,306
_RS15560
AZOBR_RS15565: AZOBR_RS15565 - isopropylmalate isomerase, at 246,309 to 247,715
_RS15565
Group
Condition
AZOBR
_RS15545
AZOBR
_RS15550
AZOBR
_RS15555
AZOBR
_RS15560
AZOBR
_RS15565
nitrogen source
L-Isoleucine (N)
-0.1
N.D.
-1.4
N.D.
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.7
N.D.
-0.4
N.D.
+0.2
stress
Sisomicin 0.01 mg/ml
-0.2
N.D.
+0.3
N.D.
-0.8
motility
outer cut, LB soft agar motility assay
-0.6
N.D.
+0.9
N.D.
-0.2
motility
inner cut, LB soft agar motility assay
+0.3
N.D.
+0.6
N.D.
-0.6
nitrogen source
L-Leucine (N)
+0.5
N.D.
+0.8
N.D.
-0.1
nitrogen source
L-Lysine (N)
+0.8
N.D.
+0.3
N.D.
+0.2
nitrogen source
D-Alanine (N)
+0.8
N.D.
+0.6
N.D.
-0.1
motility
inner cut, LB soft agar motility assay
+0.6
N.D.
+0.9
N.D.
-0.1
nitrogen source
Cytosine (N)
+0.8
N.D.
+0.5
N.D.
+0.1
nitrogen source
Glucuronamide (N)
+0.9
N.D.
+0.2
N.D.
+0.2
carbon source
succinate (C)
+0.4
N.D.
+0.7
N.D.
+0.2
nitrogen source
Urea (N)
+0.1
N.D.
+0.8
N.D.
+0.4
carbon source
Ethanol (C)
+0.5
N.D.
+0.5
N.D.
+0.3
nitrogen source
Parabanic Acid (N)
+0.8
N.D.
+0.6
N.D.
+0.1
nitrogen source
L-Lysine (N)
+0.4
N.D.
+0.7
N.D.
+0.3
nitrogen source
L-Aspartic Acid (N)
+0.6
N.D.
+0.5
N.D.
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
N.D.
+0.5
N.D.
+0.5
nitrogen source
Ammonium chloride (N)
+0.9
N.D.
+0.6
N.D.
+0.0
carbon source
D,L-Lactate (C)
+0.4
N.D.
+0.7
N.D.
+0.4
nitrogen source
L-Threonine (N)
+0.4
N.D.
+1.1
N.D.
+0.1
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.6
N.D.
+0.7
N.D.
+0.2
nitrogen source
L-Aspartic Acid (N)
+0.7
N.D.
+0.8
N.D.
+0.0
nitrogen source
nitrate (N)
+0.9
N.D.
+0.8
N.D.
-0.1
nitrogen source
casaminos (N)
+0.6
N.D.
+0.8
N.D.
+0.2
carbon source
pyruvate (C)
+0.4
N.D.
+1.0
N.D.
+0.3
stress
2-Furfuraldehyde 0.2 vol%
+0.7
N.D.
+0.4
N.D.
+0.6
carbon source
L-Lactate (C)
+0.5
N.D.
+0.9
N.D.
+0.3
nitrogen source
L-Threonine (N)
+0.8
N.D.
+0.7
N.D.
+0.3
nitrogen source
L-Citrulline (N)
+0.9
N.D.
+0.8
N.D.
+0.2
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