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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS14070 and AZOBR_RS14075 are separated by 148 nucleotides
AZOBR_RS14075 and AZOBR_RS14080 are separated by 42 nucleotides
AZOBR_RS14080 and AZOBR_RS14085 are separated by 138 nucleotides
AZOBR_RS14085 and AZOBR_RS14090 are separated by 1330 nucleotides
AZOBR_RS14070: AZOBR_RS14070 - succinyl-CoA synthetase subsunit alpha, at 2,956,742 to 2,957,617
_RS14070
AZOBR_RS14075: AZOBR_RS14075 - MFS transporter, at 2,957,766 to 2,960,690
_RS14075
AZOBR_RS14080: AZOBR_RS14080 - dihydrolipoamide succinyltransferase, at 2,960,733 to 2,961,986
_RS14080
AZOBR_RS14085: AZOBR_RS14085 - histidine kinase, at 2,962,125 to 2,963,318
_RS14085
AZOBR_RS14090: AZOBR_RS14090 - putative Diguanylate cyclase yddV, at 2,964,649 to 2,966,028
_RS14090
Group
Condition
AZOBR
_RS14070
AZOBR
_RS14075
AZOBR
_RS14080
AZOBR
_RS14085
AZOBR
_RS14090
stress
2-pentyl-furan 1.780666667 mM
-0.5
N.D.
N.D.
N.D.
-0.6
stress
3-octanone 5.2896 mM
-0.7
N.D.
N.D.
N.D.
-0.1
stress
2-pentyl-furan 2.671 mM
-0.9
N.D.
N.D.
N.D.
+0.2
nitrogen source
L-Threonine (N)
-1.0
N.D.
N.D.
N.D.
+0.4
stress
2-pentyl-furan 1.335528 mM
-0.7
N.D.
N.D.
N.D.
+0.3
stress
3-octanone 6.3476 mM
-0.7
N.D.
N.D.
N.D.
+0.3
stress
2-pentyl-furan 1.780666667 mM
-0.5
N.D.
N.D.
N.D.
+0.5
carbon source
succinate (C)
+0.6
N.D.
N.D.
N.D.
-0.4
carbon source
D,L-Lactate (C)
+0.6
N.D.
N.D.
N.D.
-0.4
stress
Benzethonium chloride 0.003 mM
+0.9
N.D.
N.D.
N.D.
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.9
N.D.
N.D.
N.D.
-0.6
motility
inner cut, LB soft agar motility assay
-0.5
N.D.
N.D.
N.D.
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
N.D.
N.D.
N.D.
+0.7
carbon source
L-Malic (C)
+0.7
N.D.
N.D.
N.D.
-0.1
carbon source
D-Gluconic Acid (C)
+0.7
N.D.
N.D.
N.D.
-0.1
nitrogen source
Parabanic Acid (N)
+0.5
N.D.
N.D.
N.D.
+0.4
stress
Sisomicin 0.01 mg/ml
+0.9
N.D.
N.D.
N.D.
-0.0
lb
LB
+0.3
N.D.
N.D.
N.D.
+0.6
nitrogen source
Cytosine (N)
+0.6
N.D.
N.D.
N.D.
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.9
N.D.
N.D.
N.D.
+0.1
nitrogen source
L-Threonine (N)
+0.6
N.D.
N.D.
N.D.
+0.4
nitrogen source
nitrate (N)
+0.4
N.D.
N.D.
N.D.
+0.7
stress
2-Furfuraldehyde 0.2 vol%
+0.6
N.D.
N.D.
N.D.
+0.5
motility
outer cut, LB soft agar motility assay
-0.2
N.D.
N.D.
N.D.
+1.3
nitrogen source
L-Citrulline (N)
+0.7
N.D.
N.D.
N.D.
+0.4
nitrogen source
L-Histidine (N)
+0.6
N.D.
N.D.
N.D.
+0.5
stress
Chlorite 1 mM
+0.8
N.D.
N.D.
N.D.
+0.3
nitrogen source
Glucuronamide (N)
+0.6
N.D.
N.D.
N.D.
+0.6
nitrogen source
D-Alanine (N)
+0.8
N.D.
N.D.
N.D.
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
N.D.
N.D.
N.D.
+0.8
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