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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS13235 and AZOBR_RS13240 are separated by 106 nucleotides
AZOBR_RS13240 and AZOBR_RS13245 are separated by 61 nucleotides
AZOBR_RS13245 and AZOBR_RS13250 are separated by 15 nucleotides
AZOBR_RS13250 and AZOBR_RS13255 are separated by 47 nucleotides
AZOBR_RS13235: AZOBR_RS13235 - conserved exported protein of unknown function, at 2,799,866 to 2,801,089
_RS13235
AZOBR_RS13240: AZOBR_RS13240 - sodium:proton antiporter, at 2,801,196 to 2,802,671
_RS13240
AZOBR_RS13245: AZOBR_RS13245 - carbamate kinase, at 2,802,733 to 2,803,686
_RS13245
AZOBR_RS13250: AZOBR_RS13250 - ornithine carbamoyltransferase, at 2,803,702 to 2,804,706
_RS13250
AZOBR_RS13255: AZOBR_RS13255 - arginine deiminase, at 2,804,754 to 2,805,983
_RS13255
Group
Condition
AZOBR
_RS13235
AZOBR
_RS13240
AZOBR
_RS13245
AZOBR
_RS13250
AZOBR
_RS13255
nitrogen source
Cytosine (N)
-0.4
-0.1
-0.3
-0.4
-0.4
nitrogen source
casaminos (N)
-0.5
+0.1
-0.2
+0.0
-0.8
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.3
-0.3
-0.1
-0.2
-0.6
stress
3-octanone 6.3476 mM
-0.4
-0.5
-0.1
-0.3
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.2
-0.2
-0.1
-0.4
-0.4
carbon source
L-Malic (C)
-0.3
-0.1
-0.2
-0.3
-0.3
stress
2-pentyl-furan 2.671 mM
-0.6
-0.1
-0.3
-0.3
+0.2
nitrogen source
Urea (N)
-0.3
-0.1
-0.2
-0.1
-0.4
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.2
-0.2
-0.2
-0.3
-0.3
nitrogen source
Ammonium chloride (N)
-0.4
-0.0
-0.2
-0.1
-0.4
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.1
-0.2
-0.2
-0.3
-0.4
anaerobic; rich media
LB; anaerobic
-0.1
-0.1
-0.1
-0.2
-0.6
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.1
-0.2
-0.1
-0.2
-0.5
carbon source
succinate (C)
-0.3
+0.0
-0.2
-0.2
-0.3
nitrogen source
L-Isoleucine (N)
+0.0
+0.0
-0.2
+0.1
-0.9
stress
2-pentyl-furan 1.780666667 mM
-0.2
-0.2
+0.1
-0.1
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.0
-0.1
+0.2
-0.8
stress
3-octanone 6.3476 mM
-0.2
-0.3
+0.1
-0.5
+0.4
nitrogen source
L-Threonine (N)
-0.1
+0.3
-0.0
+0.0
-0.6
stress
2-pentyl-furan 1.335528 mM
-0.4
-0.2
+0.1
+0.0
+0.4
stress
2-pentyl-furan 1.335528 mM
-0.3
-0.3
+0.2
-0.3
+0.5
stress
3-octanone 6.3476 mM
-0.1
-0.2
-0.2
-0.2
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.1
+0.3
+0.2
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.1
-0.3
+0.1
+0.4
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.2
+0.2
-0.1
-0.1
+0.6
motility
inner cut, LB soft agar motility assay
+0.1
+0.3
+0.2
+0.1
+0.4
nitrogen source
L-Asparagine (N)
+0.8
+0.2
+0.2
+0.1
+0.0
nitrogen source
nitrate (N)
+0.2
+0.2
+0.2
+0.2
+0.6
nitrogen source
L-Asparagine (N)
+0.9
+0.2
+0.2
+0.1
+0.1
lb
LB
+0.1
+0.2
+0.4
+0.3
+0.8
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