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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS12835 and AZOBR_RS12840 are separated by 12 nucleotides
AZOBR_RS12840 and AZOBR_RS12845 are separated by 174 nucleotides
AZOBR_RS12845 and AZOBR_RS12850 are separated by 60 nucleotides
AZOBR_RS12850 and AZOBR_RS12855 are separated by 148 nucleotides
AZOBR_RS12835: AZOBR_RS12835 - RNA methyltransferase, at 2,706,115 to 2,706,993
_RS12835
AZOBR_RS12840: AZOBR_RS12840 - hypothetical protein, at 2,707,006 to 2,707,455
_RS12840
AZOBR_RS12845: AZOBR_RS12845 - methionine sulfoxide reductase A, at 2,707,630 to 2,708,262
_RS12845
AZOBR_RS12850: AZOBR_RS12850 - hypothetical protein, at 2,708,323 to 2,709,426
_RS12850
AZOBR_RS12855: AZOBR_RS12855 - hypothetical protein, at 2,709,575 to 2,710,660
_RS12855
Group
Condition
AZOBR
_RS12835
AZOBR
_RS12840
AZOBR
_RS12845
AZOBR
_RS12850
AZOBR
_RS12855
carbon source
D-Gluconic Acid (C)
+0.3
-3.8
+0.1
-0.1
+0.2
stress
3-octanone 6.3476 mM
+0.4
-3.2
+0.1
+0.0
-0.4
stress
1-octen-3-ol 0.6030326667 mM
-0.2
-1.9
+0.1
-0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.7
-0.7
-0.1
-0.2
dmso control
DMSO control
-0.1
-1.7
+0.1
-0.1
-0.1
motility
inner cut, LB soft agar motility assay
-0.9
+0.4
-0.4
-0.1
-0.4
stress
2-pentyl-furan 2.671 mM
-0.6
-0.7
+0.0
+0.0
-0.1
lb no stress control
LB no stress control
-0.0
-1.1
+0.1
-0.0
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
+0.2
-1.1
+0.0
-0.1
-0.2
stress
3-octanone 6.3476 mM
+0.3
-1.3
+0.1
-0.0
+0.0
stress
D-Cycloserine 0.125 mg/ml
-0.9
+1.2
-0.4
-0.3
-0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.3
-0.8
-0.1
+0.2
-0.2
stress
2-pentyl-furan 1.335528 mM
+0.4
-0.8
+0.0
-0.1
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
+0.3
-0.8
+0.2
-0.0
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.7
+0.7
-0.1
+0.3
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
+0.4
-0.7
-0.2
+0.1
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.6
-0.1
-0.2
-0.1
stress
Sisomicin 0.01 mg/ml
-0.8
+0.7
+0.0
+0.0
-0.1
nitrogen source
L-Threonine (N)
-0.7
+0.6
-0.1
+0.2
+0.1
motility
inner cut, LB soft agar motility assay
-0.5
+0.6
+0.2
+0.0
-0.0
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.5
-0.3
-0.2
+0.2
+0.1
stress
3-octanone 5.2896 mM
+0.4
+0.5
+0.1
-0.0
-0.3
nitrogen source
L-Histidine (N)
+0.4
+0.5
-0.3
+0.0
+0.2
stress
3-octanone 4.2317 mM
+0.4
+0.9
-0.1
-0.1
-0.2
stress
2-pentyl-furan 1.780666667 mM
-0.4
+1.4
+0.1
-0.0
-0.1
motility
outer cut, LB soft agar motility assay
-0.1
+1.1
+0.5
+0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
+0.5
-0.1
+0.2
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+0.6
-0.1
+0.0
+0.0
stress
2-pentyl-furan 1.780666667 mM
+0.2
+1.1
+0.2
-0.1
-0.0
stress
2-pentyl-furan 1.780666667 mM
+0.7
+1.0
+0.0
-0.1
-0.3
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