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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS10625 and AZOBR_RS10630 are separated by 846 nucleotides
AZOBR_RS10630 and AZOBR_RS10635 are separated by 85 nucleotides
AZOBR_RS10635 and AZOBR_RS10640 are separated by 92 nucleotides
AZOBR_RS10640 and AZOBR_RS10645 are separated by 38 nucleotides
AZOBR_RS10625: AZOBR_RS10625 - RNA polymerase sigma-70 factor, at 2,231,261 to 2,231,749
_RS10625
AZOBR_RS10630: AZOBR_RS10630 - lytic transglycosylase, at 2,232,596 to 2,233,591
_RS10630
AZOBR_RS10635: AZOBR_RS10635 - hypothetical protein, at 2,233,677 to 2,234,435
_RS10635
AZOBR_RS10640: AZOBR_RS10640 - tRNA-Glu, at 2,234,528 to 2,234,603
_RS10640
AZOBR_RS10645: AZOBR_RS10645 - tRNA-Glu, at 2,234,642 to 2,234,717
_RS10645
Group
Condition
AZOBR
_RS10625
AZOBR
_RS10630
AZOBR
_RS10635
AZOBR
_RS10640
AZOBR
_RS10645
stress
Sisomicin 0.01 mg/ml
-1.9
-0.2
-0.4
-4.5
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-3.2
+0.3
-0.1
-1.7
N.D.
stress
D-Cycloserine 0.125 mg/ml
+0.4
+0.0
+0.0
-4.3
N.D.
motility
inner cut, LB soft agar motility assay
-4.7
+0.1
+0.0
+0.6
N.D.
stress
2-Furfuraldehyde 0.2 vol%
-0.4
-0.2
-0.4
-2.8
N.D.
motility
outer cut, LB soft agar motility assay
-3.0
-0.3
-0.2
-0.2
N.D.
stress
Cobalt chloride 0.2 mM
-0.9
-0.2
-0.1
-2.3
N.D.
nitrogen source
L-Isoleucine (N)
-3.9
+0.1
-0.0
+0.4
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.6
+0.0
-0.0
-2.5
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.4
-0.2
+0.3
-3.4
N.D.
nitrogen source
Cytosine (N)
-1.7
+0.2
-0.2
-1.1
N.D.
carbon source
L-Malic (C)
-2.0
+0.1
-0.1
-0.8
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-2.8
+0.1
+0.3
-0.2
N.D.
stress
Cobalt chloride 0.3 mM
-1.7
-0.2
-0.1
-0.5
N.D.
nitrogen source
L-Serine (N)
-2.1
+0.1
+0.1
-0.4
N.D.
nitrogen source
L-Threonine (N)
-1.8
-0.0
+0.5
-0.9
N.D.
nitrogen source
L-Histidine (N)
-0.3
-0.1
-0.3
-1.5
N.D.
lb
LB
-0.4
-0.1
+0.0
-1.8
N.D.
motility
inner cut, LB soft agar motility assay
-0.7
-0.3
-0.0
-1.2
N.D.
carbon source
Ethanol (C)
-0.6
-0.1
+0.1
-1.6
N.D.
stress
Vancomycin 0.03 mg/ml
-1.1
-0.0
-0.5
-0.5
N.D.
stress
Chlorite 1 mM
-1.8
-0.1
-0.2
-0.0
N.D.
nitrogen source
casaminos (N)
-1.7
-0.2
+0.3
-0.5
N.D.
lb
LB
-2.4
+0.0
+0.1
+0.1
N.D.
nitrogen source
Parabanic Acid (N)
-1.3
+0.1
+0.0
-0.8
N.D.
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.4
+0.0
+0.2
-1.6
N.D.
lb
LB
-0.9
-0.2
+0.3
-0.9
N.D.
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-0.9
+0.5
+0.4
+0.4
N.D.
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+1.2
-0.2
+0.4
-0.5
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+1.7
-0.3
+0.2
-0.1
N.D.
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