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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS10600 and AZOBR_RS10605 are separated by 39 nucleotides
AZOBR_RS10605 and AZOBR_RS10610 are separated by 217 nucleotides
AZOBR_RS10610 and AZOBR_RS10615 are separated by 18 nucleotides
AZOBR_RS10615 and AZOBR_RS10620 are separated by 330 nucleotides
AZOBR_RS10600: AZOBR_RS10600 - peptidase C69, at 2,225,572 to 2,227,005
_RS10600
AZOBR_RS10605: AZOBR_RS10605 - amino acid-binding protein, at 2,227,045 to 2,227,569
_RS10605
AZOBR_RS10610: AZOBR_RS10610 - hypothetical protein, at 2,227,787 to 2,229,862
_RS10610
AZOBR_RS10615: AZOBR_RS10615 - exported protein of unknown function, at 2,229,881 to 2,230,534
_RS10615
AZOBR_RS10620: AZOBR_RS10620 - membrane protein, at 2,230,865 to 2,231,029
_RS10620
Group
Condition
AZOBR
_RS10600
AZOBR
_RS10605
AZOBR
_RS10610
AZOBR
_RS10615
AZOBR
_RS10620
carbon source
Ethanol (C)
-1.8
-0.4
+0.0
-0.1
N.D.
carbon source
L-Leucine (C)
-1.3
-0.5
-0.1
-0.1
N.D.
nitrogen source
nitrate (N)
-0.1
-1.6
-0.1
-0.1
N.D.
carbon source
L-Proline (C)
-1.2
-0.6
+0.0
-0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.6
-0.4
-0.2
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.2
-1.6
-0.1
-0.2
N.D.
carbon source
Ethanol (C)
-1.5
+0.0
-0.1
-0.0
N.D.
stress
2-pentyl-furan 1.335528 mM
-0.4
-1.2
+0.2
-0.1
N.D.
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
-1.7
-0.1
+0.1
+0.3
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-1.1
-0.2
-0.2
N.D.
nitrogen source
L-Glutamic (N)
-0.5
-1.2
+0.0
+0.3
N.D.
motility
inner cut, LB soft agar motility assay
+0.3
-1.4
-0.1
-0.2
N.D.
carbon source
L-Proline (C)
-1.2
-0.0
+0.0
+0.1
N.D.
stress
2-pentyl-furan 1.780666667 mM
+0.2
-0.8
-0.3
-0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.9
-0.0
-0.1
N.D.
stress
Chlorite 1 mM
+0.3
-0.7
-0.2
-0.1
N.D.
carbon source
Glycerol (C)
-0.4
-0.6
+0.1
+0.1
N.D.
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-1.2
-0.2
+0.2
+0.5
N.D.
stress
2-pentyl-furan 2.671 mM
+0.4
-0.6
-0.4
-0.1
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.5
-0.4
-0.1
+0.4
N.D.
carbon source
D-Gluconic Acid (C)
-0.5
+0.5
-0.5
-0.1
N.D.
nitrogen source
Glucuronamide (N)
+0.1
-0.9
+0.1
+0.2
N.D.
carbon source
L-Lactate (C)
-0.1
-0.7
+0.3
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
-0.9
+0.4
+0.0
+0.1
N.D.
motility
inner cut, LB soft agar motility assay
+0.4
-0.8
-0.2
+0.1
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.2
+0.6
-0.0
+0.5
N.D.
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.1
+1.0
-0.2
+0.2
N.D.
lb
LB
+0.3
+1.0
-0.1
-0.0
N.D.
stress
Benzethonium chloride 0.003 mM
+0.3
+1.2
+0.2
-0.2
N.D.
lb
LB
+0.7
+0.8
+0.2
-0.1
N.D.
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