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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS10540 and AZOBR_RS10545 overlap by 4 nucleotides
AZOBR_RS10545 and AZOBR_RS10550 are separated by 399 nucleotides
AZOBR_RS10550 and AZOBR_RS10560 are separated by 1947 nucleotides
AZOBR_RS10560 and AZOBR_RS10565 are separated by 2 nucleotides
AZOBR_RS10540: AZOBR_RS10540 - peptidase M16, at 2,210,981 to 2,212,237
_RS10540
AZOBR_RS10545: AZOBR_RS10545 - threonine synthase, at 2,212,234 to 2,213,646
_RS10545
AZOBR_RS10550: AZOBR_RS10550 - 1 4-beta-glucanase, at 2,214,046 to 2,215,137
_RS10550
AZOBR_RS10560: AZOBR_RS10560 - hypothetical protein, at 2,217,085 to 2,217,825
_RS10560
AZOBR_RS10565: AZOBR_RS10565 - hypothetical protein, at 2,217,828 to 2,218,202
_RS10565
Group
Condition
AZOBR
_RS10540
AZOBR
_RS10545
AZOBR
_RS10550
AZOBR
_RS10560
AZOBR
_RS10565
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
N.D.
+0.3
-2.9
-0.2
stress
Cobalt chloride 0.2 mM
-0.3
N.D.
+0.1
-1.2
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
N.D.
-0.1
-1.0
-0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.2
N.D.
+0.0
-1.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
N.D.
+0.2
-0.8
-0.1
stress
Paraquat dichloride 0.02 mg/ml
-0.2
N.D.
-0.0
+0.4
-0.9
anaerobic; rich media
LB; anaerobic
+0.6
N.D.
+0.2
-0.8
-0.4
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.4
N.D.
+0.3
-1.0
+0.0
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.6
N.D.
-0.0
-1.3
+0.5
nitrogen source
L-Threonine (N)
-0.1
N.D.
-0.1
+0.7
-0.6
lb
LB
+0.2
N.D.
+0.2
-0.9
+0.5
nitrogen source
Parabanic Acid (N)
-0.4
N.D.
-0.2
+1.0
-0.2
stress
Paraquat dichloride 0.04 mg/ml
+0.5
N.D.
+0.3
-0.4
+0.2
nitrogen source
L-Leucine (N)
+0.0
N.D.
-0.0
+1.1
-0.4
stress
2-pentyl-furan 2.671 mM
+0.2
N.D.
-0.1
+0.9
-0.2
carbon source
L-Lactate (C)
+0.2
N.D.
-0.2
+1.0
-0.1
stress
3-octanone 6.3476 mM
-0.1
N.D.
-0.1
+1.3
-0.4
stress
2-pentyl-furan 1.335528 mM
+0.3
N.D.
-0.1
+1.2
-0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.3
N.D.
-0.1
+0.5
+0.5
motility
inner cut, LB soft agar motility assay
-0.0
N.D.
+0.0
+1.3
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
-0.1
N.D.
-0.2
+0.9
+0.6
stress
Sisomicin 0.01 mg/ml
-0.1
N.D.
+0.1
+1.3
+0.0
nitrogen source
Parabanic Acid (N)
+0.0
N.D.
+0.1
+1.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
N.D.
+0.1
+1.1
-0.1
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.3
N.D.
-0.1
+0.8
+0.4
nitrogen source
L-Isoleucine (N)
-0.1
N.D.
+0.3
+1.0
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
N.D.
-0.0
+1.3
+0.6
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.2
N.D.
+0.1
+0.7
+0.7
motility
inner cut, LB soft agar motility assay
+0.2
N.D.
+0.3
+1.0
+0.4
stress
2-pentyl-furan 1.780666667 mM
-0.2
N.D.
+0.4
+0.7
+1.0
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