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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS10220 and AZOBR_RS10225 are separated by 421 nucleotides
AZOBR_RS10225 and AZOBR_RS10230 are separated by 140 nucleotides
AZOBR_RS10230 and AZOBR_RS10235 are separated by 43 nucleotides
AZOBR_RS10235 and AZOBR_RS10240 are separated by 67 nucleotides
AZOBR_RS10220: AZOBR_RS10220 - hypothetical protein, at 2,134,280 to 2,135,104
_RS10220
AZOBR_RS10225: AZOBR_RS10225 - diaminopimelate decarboxylase, at 2,135,526 to 2,136,800
_RS10225
AZOBR_RS10230: AZOBR_RS10230 - homospermidine synthase, at 2,136,941 to 2,138,359
_RS10230
AZOBR_RS10235: AZOBR_RS10235 - cobalamin biosynthesis protein CobD, at 2,138,403 to 2,139,365
_RS10235
AZOBR_RS10240: AZOBR_RS10240 - L-threonine-O-3-phosphate decarboxylase, at 2,139,433 to 2,140,452
_RS10240
Group
Condition
AZOBR
_RS10220
AZOBR
_RS10225
AZOBR
_RS10230
AZOBR
_RS10235
AZOBR
_RS10240
stress
2-pentyl-furan 1.780666667 mM
+0.1
-0.3
+0.2
-3.8
-0.9
carbon source
D-Gluconic Acid (C)
+0.1
-0.2
-2.7
-0.9
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.2
-0.1
-1.1
-1.4
-0.9
stress
Cobalt chloride 0.2 mM
-0.0
-0.3
-1.3
-1.6
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
+0.2
-0.6
-2.2
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.0
+0.1
+0.1
-1.6
-1.3
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
+0.0
+0.2
-0.9
-1.4
-0.4
carbon source
L-Glutamine (C)
+0.1
-0.2
-1.4
-1.1
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.0
-0.3
-1.7
+0.1
stress
Cobalt chloride 0.3 mM
+0.3
+0.0
-2.2
-0.6
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.3
+0.0
-2.7
+0.1
motility
inner cut, LB soft agar motility assay
-0.0
+0.3
-0.3
-1.5
-0.5
carbon source
Glycerol (C)
+0.3
-0.0
-1.6
-0.3
-0.1
carbon source
a-Ketoglutaric (C)
+0.2
+0.1
-2.0
+0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.5
-0.2
-2.4
+0.6
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
+0.0
+0.1
+0.3
-1.1
-1.0
motility
inner cut, LB soft agar motility assay
+0.0
+0.2
+0.4
-0.9
-0.9
lb
LB
+0.2
+0.1
-0.8
-1.6
+0.9
carbon source
D-Gluconic Acid (C)
+0.1
-0.0
-2.5
+0.8
+0.6
carbon source
Glycerol (C)
-0.3
+0.0
-1.7
+0.5
+0.5
nitrogen source
L-Glutamic (N)
+0.2
+0.1
-1.6
+0.8
-0.3
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
-1.7
+0.6
-0.1
carbon source
D-Fructose (C)
+0.4
+0.1
-1.8
+0.4
+0.3
stress
Benzethonium chloride 0.003 mM
-0.1
+0.4
-0.4
+1.0
-1.1
nitrogen source
Cytosine (N)
-0.2
+0.1
-0.8
+0.8
+0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.3
+0.3
+0.2
+1.1
-1.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.0
+0.3
+1.5
-0.7
-0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.1
+0.4
+1.6
-0.1
-0.5
nitrogen source
casaminos (N)
-0.2
+0.1
-0.1
+1.2
+0.8
nitrogen source
L-Isoleucine (N)
-0.3
+0.3
+1.0
+1.8
+0.5
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