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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS09720 and AZOBR_RS09725 are separated by 139 nucleotides
AZOBR_RS09725 and AZOBR_RS09730 are separated by 141 nucleotides
AZOBR_RS09730 and AZOBR_RS09735 are separated by 217 nucleotides
AZOBR_RS09735 and AZOBR_RS09740 are separated by 61 nucleotides
AZOBR_RS09720: AZOBR_RS09720 - succinate-semialdehyde dehdyrogenase, at 2,035,614 to 2,037,107
_RS09720
AZOBR_RS09725: AZOBR_RS09725 - hypothetical protein, at 2,037,247 to 2,037,699
_RS09725
AZOBR_RS09730: AZOBR_RS09730 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,037,841 to 2,039,226
_RS09730
AZOBR_RS09735: AZOBR_RS09735 - MFS transporter permease, at 2,039,444 to 2,040,793
_RS09735
AZOBR_RS09740: AZOBR_RS09740 - Mn-containing catalase, at 2,040,855 to 2,041,751
_RS09740
Group
Condition
AZOBR
_RS09720
AZOBR
_RS09725
AZOBR
_RS09730
AZOBR
_RS09735
AZOBR
_RS09740
lb
LB
-0.5
-1.5
N.D.
-0.8
-0.0
anaerobic; rich media
LB; anaerobic
-0.0
-0.3
N.D.
-2.4
+0.2
stress
Sisomicin 0.01 mg/ml
-1.1
+0.3
N.D.
-1.0
-0.2
stress
Bacitracin 0.25 mg/ml
+0.1
+0.1
N.D.
-2.0
-0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.4
-0.3
N.D.
-1.2
-0.0
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.1
-0.7
N.D.
-1.0
-0.1
stress
Benzethonium chloride 0.003 mM
+0.2
-0.6
N.D.
-1.3
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.4
-0.3
N.D.
-0.9
-0.2
motility
inner cut, LB soft agar motility assay
-0.4
-0.2
N.D.
-1.3
+0.1
motility
outer cut, LB soft agar motility assay
-0.2
-0.7
N.D.
-1.1
+0.3
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.2
-0.1
N.D.
-1.3
-0.1
motility
inner cut, LB soft agar motility assay
-0.3
+0.1
N.D.
-1.4
+0.1
nitrogen source
D-Alanine (N)
+0.1
-0.4
N.D.
-1.0
-0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.0
-0.5
N.D.
-0.8
-0.1
stress
Vancomycin 0.03 mg/ml
+0.1
-0.2
N.D.
-1.2
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.2
-0.7
N.D.
-1.1
+0.3
nitrogen source
D-Alanine (N)
+0.2
+0.1
N.D.
-1.3
-0.0
stress
D-Cycloserine 0.125 mg/ml
-0.1
-0.6
N.D.
-0.5
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.8
N.D.
-0.7
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.3
N.D.
-0.8
-0.1
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.2
+0.4
N.D.
-1.1
-0.5
stress
3-octanone 5.2896 mM
+0.0
+0.0
N.D.
-1.1
+0.3
stress
3-octanone 5.2896 mM
+0.3
+0.4
N.D.
-1.2
-0.1
stress
3-octanone 5.2896 mM
+0.1
+0.3
N.D.
-0.8
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.9
N.D.
+0.2
-0.1
stress
2-pentyl-furan 1.780666667 mM
-0.5
+0.3
N.D.
-0.6
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
+0.6
N.D.
-0.6
-0.3
stress
3-octanone 6.3476 mM
+0.1
+0.3
N.D.
-0.9
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.1
N.D.
-0.4
-0.3
stress
2-Furfuraldehyde 0.2 vol%
+0.2
+0.8
N.D.
-0.4
+0.2
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