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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS09205 and AZOBR_RS09210 overlap by 4 nucleotides
AZOBR_RS09210 and AZOBR_RS09215 are separated by 111 nucleotides
AZOBR_RS09215 and AZOBR_RS09225 are separated by 1146 nucleotides
AZOBR_RS09225 and AZOBR_RS09230 are separated by 181 nucleotides
AZOBR_RS09205: AZOBR_RS09205 - hypothetical protein, at 1,921,070 to 1,922,644
_RS09205
AZOBR_RS09210: AZOBR_RS09210 - ABC transporter, at 1,922,641 to 1,923,453
_RS09210
AZOBR_RS09215: AZOBR_RS09215 - cell division protein FtsH, at 1,923,565 to 1,925,343
_RS09215
AZOBR_RS09225: AZOBR_RS09225 - membrane protein, at 1,926,490 to 1,926,945
_RS09225
AZOBR_RS09230: AZOBR_RS09230 - pyridoxamine 5'-phosphate oxidase, at 1,927,127 to 1,927,738
_RS09230
Group
Condition
AZOBR
_RS09205
AZOBR
_RS09210
AZOBR
_RS09215
AZOBR
_RS09225
AZOBR
_RS09230
stress
D-Cycloserine 0.125 mg/ml
-0.0
-0.3
-5.6
-1.6
N.D.
stress
2-pentyl-furan 1.780666667 mM
-0.4
-0.3
-4.8
-0.5
N.D.
motility
outer cut, LB soft agar motility assay
+0.1
-0.6
-4.9
+0.1
N.D.
stress
Paraquat dichloride 0.04 mg/ml
-0.8
-0.9
-2.1
-1.2
N.D.
stress
2-Furfuraldehyde 0.2 vol%
+0.1
-0.0
-4.2
-0.6
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.2
-0.0
-1.5
-2.7
N.D.
lb
LB
-0.0
+0.1
-3.7
-0.0
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.1
-0.1
-0.9
-2.4
N.D.
stress
Benzethonium chloride 0.003 mM
+0.3
-0.1
+0.1
-3.9
N.D.
stress
Paraquat dichloride 0.02 mg/ml
-0.2
-0.3
-1.8
-1.1
N.D.
motility
inner cut, LB soft agar motility assay
+0.4
-0.3
-3.0
-0.5
N.D.
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.1
+0.1
-2.8
-0.6
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.1
-0.2
-2.8
-0.0
N.D.
motility
inner cut, LB soft agar motility assay
+0.0
-1.0
-2.0
-0.1
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.1
+0.1
-0.6
-2.6
N.D.
lb
LB
+0.2
-0.4
-2.2
-0.3
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.3
+0.0
-2.8
-0.2
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.1
-0.1
-2.7
+0.4
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
+0.4
-0.1
+0.6
-3.3
N.D.
carbon source
butyrate (C)
+0.2
-0.2
+1.0
-2.5
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
+0.3
+0.1
+0.5
-2.5
N.D.
nitrogen source
Ammonium chloride (N)
+0.1
+0.3
+0.8
-2.0
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.1
+0.2
+1.1
-2.1
N.D.
nitrogen source
L-Lysine (N)
+0.1
+0.1
+1.3
-2.1
N.D.
nitrogen source
L-Isoleucine (N)
-0.1
+0.3
+1.9
-1.9
N.D.
nitrogen source
D-Alanine (N)
+0.2
+0.2
+1.3
-1.4
N.D.
carbon source
L-Lactate (C)
+0.4
+0.2
+1.5
-1.1
N.D.
carbon source
succinate (C)
+0.1
+0.1
+2.0
-1.2
N.D.
nitrogen source
L-Histidine (N)
+0.2
-0.1
+2.3
-0.6
N.D.
nitrogen source
L-Threonine (N)
-0.2
+0.3
+1.0
+1.9
N.D.
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