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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS08900 and AZOBR_RS08905 are separated by 525 nucleotides
AZOBR_RS08905 and AZOBR_RS08910 are separated by 230 nucleotides
AZOBR_RS08910 and AZOBR_RS08915 are separated by 790 nucleotides
AZOBR_RS08915 and AZOBR_RS08920 are separated by 142 nucleotides
AZOBR_RS08900: AZOBR_RS08900 - GCN5 family N-acetyltransferase, at 1,862,944 to 1,863,468
_RS08900
AZOBR_RS08905: AZOBR_RS08905 - RNA polymerase sigma 70, at 1,863,994 to 1,864,884
_RS08905
AZOBR_RS08910: AZOBR_RS08910 - methyl-accepting chemotaxis protein, at 1,865,115 to 1,866,461
_RS08910
AZOBR_RS08915: AZOBR_RS08915 - acetyltransferase, at 1,867,252 to 1,867,473
_RS08915
AZOBR_RS08920: AZOBR_RS08920 - hypothetical protein, at 1,867,616 to 1,868,086
_RS08920
Group
Condition
AZOBR
_RS08900
AZOBR
_RS08905
AZOBR
_RS08910
AZOBR
_RS08915
AZOBR
_RS08920
nitrogen source
Parabanic Acid (N)
-0.1
-1.5
+0.1
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
-0.4
+0.2
-1.3
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-1.3
-0.0
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-1.1
-0.4
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.7
-0.9
N.D.
N.D.
motility
inner cut, LB soft agar motility assay
-0.3
-0.5
-0.5
N.D.
N.D.
nitrogen source
Parabanic Acid (N)
+0.1
-1.4
+0.1
N.D.
N.D.
stress
2-pentyl-furan 1.335528 mM
+0.1
-1.1
-0.2
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
+0.1
-0.8
-0.3
N.D.
N.D.
stress
Cobalt chloride 0.3 mM
-0.1
-0.8
-0.2
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.8
-0.3
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-0.2
-0.6
-0.2
N.D.
N.D.
nitrogen source
L-Serine (N)
-0.1
-1.1
+0.2
N.D.
N.D.
lb no stress control
LB no stress control
+0.0
-0.7
-0.3
N.D.
N.D.
stress
3-octanone 6.3476 mM
-0.2
-0.6
-0.2
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.6
-0.3
N.D.
N.D.
stress
2-pentyl-furan 1.780666667 mM
+0.0
-1.0
+0.1
N.D.
N.D.
stress
2-pentyl-furan 1.335528 mM
+0.0
-0.9
+0.1
N.D.
N.D.
stress
1-octen-3-ol 0.6784116667 mM
+0.1
-1.0
+0.1
N.D.
N.D.
stress
1-octen-3-ol 0.7753276667 mM
+0.1
-0.7
-0.1
N.D.
N.D.
stress
2-pentyl-furan 1.335528 mM
-0.1
+0.2
-0.8
N.D.
N.D.
nitrogen source
Cytosine (N)
-0.0
-0.8
+0.1
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
-0.2
-0.6
+0.2
N.D.
N.D.
stress
3-octanone 6.3476 mM
+0.3
-0.7
-0.1
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-1.3
+0.6
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
+0.3
-0.3
-0.4
N.D.
N.D.
nitrogen source
L-Glutamic (N)
+0.0
-0.7
+0.3
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.9
+0.4
N.D.
N.D.
stress
3-octanone 6.3476 mM
+0.2
-0.5
+0.1
N.D.
N.D.
stress
2-pentyl-furan 2.671 mM
-0.1
+0.7
-0.6
N.D.
N.D.
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