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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS08845 and AZOBR_RS08850 are separated by 219 nucleotides
AZOBR_RS08850 and AZOBR_RS08855 are separated by 165 nucleotides
AZOBR_RS08855 and AZOBR_RS08860 are separated by 35 nucleotides
AZOBR_RS08860 and AZOBR_RS08865 are separated by 144 nucleotides
AZOBR_RS08845: AZOBR_RS08845 - ABC transporter substrate-binding protein, at 1,850,729 to 1,851,829
_RS08845
AZOBR_RS08850: AZOBR_RS08850 - glutamine synthetase, at 1,852,049 to 1,853,392
_RS08850
AZOBR_RS08855: AZOBR_RS08855 - FAD-dependent oxidoreductase, at 1,853,558 to 1,854,838
_RS08855
AZOBR_RS08860: AZOBR_RS08860 - hypothetical protein, at 1,854,874 to 1,855,893
_RS08860
AZOBR_RS08865: AZOBR_RS08865 - ferric reductase, at 1,856,038 to 1,857,378
_RS08865
Group
Condition
AZOBR
_RS08845
AZOBR
_RS08850
AZOBR
_RS08855
AZOBR
_RS08860
AZOBR
_RS08865
stress
2-pentyl-furan 1.335528 mM
-1.1
+0.2
-0.9
-1.4
+0.3
carbon source
L-Leucine (C)
-0.3
-0.0
-2.0
-0.0
+0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.4
+0.2
-1.7
-0.3
-0.1
carbon source
L-Proline (C)
-0.1
+0.0
-1.7
-0.1
-0.2
stress
D-Cycloserine 0.125 mg/ml
-1.1
-0.1
-0.7
-0.0
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
-0.6
-0.1
-0.3
-0.6
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.2
+0.1
-1.2
-0.2
-0.2
motility
outer cut, LB soft agar motility assay
+0.1
+0.6
-1.7
-0.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.4
-1.3
-0.2
+0.3
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.4
+0.3
-1.7
-0.1
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.2
+0.3
-1.6
+0.0
+0.2
nitrogen source
L-Citrulline (N)
-0.5
+0.2
-1.0
-0.0
+0.1
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.6
+0.2
-2.0
+0.1
-0.0
carbon source
L-Proline (C)
+0.6
+0.2
-1.7
+0.0
+0.0
stress
Chlorite 1 mM
+0.1
+0.5
-1.5
+0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.5
-0.7
-0.1
-0.4
motility
inner cut, LB soft agar motility assay
-0.0
+0.6
-1.4
+0.4
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.2
-1.0
-0.1
+0.5
lb
LB
+0.2
+0.7
-1.1
-0.1
-0.2
motility
inner cut, LB soft agar motility assay
+0.2
+0.6
-1.4
+0.1
+0.1
stress
Paraquat dichloride 0.02 mg/ml
+0.7
+0.5
-1.7
+0.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.5
-1.3
-0.1
+0.5
nitrogen source
L-Glutamic (N)
+0.2
+0.5
-0.2
-0.2
-0.7
anaerobic; rich media
LB; anaerobic
-0.2
+0.8
-0.5
-0.0
-0.3
stress
Sisomicin 0.01 mg/ml
+0.6
+0.1
-1.0
+0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.6
-0.6
-0.3
+0.5
motility
inner cut, LB soft agar motility assay
-0.1
+0.6
-1.2
+0.3
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.6
-0.6
+0.1
-0.2
nitrogen source
L-Isoleucine (N)
-0.3
-0.8
+2.5
+0.2
+0.1
stress
Paraquat dichloride 0.04 mg/ml
+1.7
+0.6
-0.3
+0.3
+0.2
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